Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq5212 102 8e-17 seq5636 100 3e-16 seq7967 93.3 4e-14 seq6957 93.3 4e-14 seq1 91.5 1e-13 >seq5212 Length=5452 Score = 102 bits (112), Expect = 8e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 4981 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 5040 Query 39838 CCCGGTGCCCGTATTT 39853 |||||||||||||||| Sbjct 5041 CCCGGTGCCCGTATTT 5056 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 4024 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 4083 Query 39838 CCCGGTGCCCGTATT 39852 ||||||||||||||| Sbjct 4084 CCCGGTGCCCGTATT 4098 >seq5636 Length=5155 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 1697 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 1756 Query 39838 CCCGGTGCCCGTATT 39852 ||||||||||||||| Sbjct 1757 CCCGGTGCCCGTATT 1771 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||| | |||||||||||| |||| |||||| ||||||||||||| |||||||||||||| Sbjct 2494 GCGAGCATGGTCTAGTGGCTATGACGTCTGCCTTACACGCAGAAGATCCCGGGTTCAATC 2553 Query 39838 CCCGGTGCCCGTAT 39851 |||||||| ||||| Sbjct 2554 CCCGGTGCTCGTAT 2567 >seq7967 Length=2729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||| | | |||||| |||| |||||||||| ||| Sbjct 935 GCGGGCATGGTCTAGTGGCTATGACGTCCGCCTAACACGCGGAAGATCCCGGGTTCGATC 876 Query 39838 CCCGGTGCCCGTATTT 39853 |||||||||||||||| Sbjct 875 CCCGGTGCCCGTATTT 860 >seq6957 Length=3530 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 39775 CAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCA 39834 || ||||| |||||||||||| |||| |||| | | |||||| |||| |||||||||| Sbjct 144 CAAGCGGGCATGGTCTAGTGGCTATGACGTCCGCCTAACACGCGGAAGATCCCGGGTTCG 85 Query 39835 ATCCCCGGTGCCCGTATTT 39853 ||||||||||||||||||| Sbjct 84 ATCCCCGGTGCCCGTATTT 66 >seq1 Length=143957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 72898 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 72957 Query 39838 CCCGGTGCCC 39847 |||||||||| Sbjct 72958 CCCGGTGCCC 72967 Score = 91.5 bits (100), Expect = 1e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 39781 GGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATCCCC 39840 || |||||||||||| |||| |||||| | ||||||||||| |||||||||| |||||| Sbjct 72969 GGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATCCCC 73028 Query 39841 GGTGCCCGTA 39850 |||||||||| Sbjct 73029 GGTGCCCGTA 73038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466064576675840