Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06]
10,336 sequences; 60,415,144 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq3225 102 8e-17
>seq3225
Length=28280
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-C 134545
|| ||||| || || | || | || || || ||||| || ||||| ||||||||| |
Sbjct 153 CCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGAC 212
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| || | | | || || |||||||| || || ||||| | |||||||||||| || ||
Sbjct 213 AGCGTTCTACCA-TCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGGAGG 271
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| ||||| || || ||||| ||| ||| || || | || || || | || ||
Sbjct 272 AATACCTTCCTTGTCCTGAATCTTTGCTTTCACGTTTTCGATGGTATCTGATGGCTCAAC 331
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| ||||| || || || | ||| || || || ||||||||
Sbjct 332 ATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 379
Score = 93.3 bits (102), Expect = 4e-14
Identities = 161/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| ||||| || || | || || || || || ||||| || |||||||||||||||
Sbjct 381 CCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCG--G 438
Query 134547 ACGGTG---TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603
|| ||| || | || || ||||| ||||| || ||||| | ||||||||| || ||
Sbjct 439 ACAGTGTCCTGCCA-TCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGA 497
Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663
|| || || || || || ||||| ||| ||| || || | || || || | ||
Sbjct 498 GGGATACCCTCCTTGTCCTGAATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGCTCA 557
Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| || ||||| ||||| || || || | || || || || || ||||||
Sbjct 558 ACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCATT 608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505333102526720
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |