Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3103 116 5e-21 >seq3103 Length=10288 Score = 116 bits (128), Expect = 5e-21 Identities = 134/175 (77%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 |||| | ||| || || || |||||||||||||| |||||||||||||| ||| || Sbjct 4002 ACTCTCTCCATGAAGAGGTCAGGAATCCAAAGAGCAGGAAAGAGATCTCTGGCTCTCATT 4061 Query 69655 TCTTCATTTCCTGT-AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 69713 ||||| ||||| || ||||||| ||| ||| | |||||| | ||||| | ||||||||| Sbjct 4062 TCTTC-TTTCCCGTGATTTTTTCTAATATCTAAAAACTCAAATATATCTGCATGCCATGG 4120 Query 69714 TTCTAGATATATCGCCATGACT-CCCGGTCGTTTATTTCCTCCCTGATCTATGTA 69767 |||| ||| | || || |||| ||| || || |||||| ||||||| ||| Sbjct 4121 CTCTACATACACCG-CAAGACTACCCTTTCTCTTTCCTCCTCCTTGATCTACGTA 4174 Score = 96.9 bits (106), Expect = 5e-15 Identities = 295/455 (65%), Gaps = 22/455 (5%) Strand=Plus/Plus Query 68997 TGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTC 69056 ||| || ||||| | |||||||| || || || ||||| | | || ||||| Sbjct 365 TGCTTCGCATGCAGCATAATAAATACACTCAAAGATAGATTTATTTAATTGTTTAGCTTC 424 Query 69057 TAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAAT 69116 || | ||| ||||| || | ||| | || ||| | || || | ||||| || || || Sbjct 425 TATAGAATCAAATGGGTATTTTAATATAAGAAAGACGTCAGCTAGGCCCTGTACACCTAT 484 Query 69117 ACCGATAGGTCTATGTCTCTTATTTGAACTTTCA-GCTTCTGGAATAGGATAATAATTAA 69175 ||| || ||||| ||| | || || | || || || || || | |||||| | || Sbjct 485 ACCTATGGGTCTGTGTTTTTTGTT-GCTCTCTCTCGCCTCGGGGAGAGGATAGAAGTTGT 543 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGA- 69234 ||||||| |||||||| |||||| | | ||| || || | | |||| | |||| Sbjct 544 TATCTATTATTTTATTTAGATTTATGGTGATTACCTTTACTATATATTTTAATA-GAGAG 602 Query 69235 AAATCAAA------------------TCGTCCATCTATAACAAACATATTCAGTGCTACA 69276 |||||||| | | | | | | | | | || | | || | Sbjct 603 AAATCAAAGAAATATTTATTTGTTTTTTTTTCTTTTTTTATACATTTAGGTAAAGATATA 662 Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 |||||||| ||||| || ||||| || | ||||| |||||||||||| || |||| Sbjct 663 GATGCTAGGTTACATACAGCTACTTCTTCTTTATTTGTATATTGTATTATTTCACAACAT 722 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 | |||||| || ||| ||| | || ||| |||||||||||| | || || || || Sbjct 723 AAATTACTCGATCGTATACACCCTAAATGTTGTTGATTACTCTTTCTATTGCATGCATCT 782 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTG 69431 || || | ||| | || || || || || ||||| Sbjct 783 TTATATAACATATATGGTGTTCCTGTCTCTATCTG 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686820051383040