Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3225 141 8e-29 seq1836 87.8 2e-12 >seq3225 Length=28280 Score = 141 bits (156), Expect = 8e-29 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | ||||| ||||| ||||||||||||||| || | | | ||||| Sbjct 171 ACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGACAGCGTTCTACCATCTTCT 230 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || ||| ||||||||||||| ||||| || || | ||| || || || Sbjct 231 AGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 290 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| ||||| | |||| | || |||| |||| ||||| || ||||| || | || Sbjct 291 ATCTTTGCTTTCACGTTTTCGATGGTATCTGATGGC-TCAACATCCAGAGTGATGGTCTT 349 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| |||||||| ||||||||||||||||| Sbjct 350 GCCAGTCAGAGTCTTCACAAAGATTTGCAT 379 Score = 138 bits (152), Expect = 1e-27 Identities = 176/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | || || | ||||| ||| | ||||| ||||| ||||| ||||||||| Sbjct 379 TGCCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGG 438 Query 27079 TCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || ||| || | ||||| ||||| || |||||| ||||||||||||| || || || Sbjct 439 ACAGTGTCCTGC-CATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGA 497 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTC 27196 || | |||||| || || ||||| ||||| | | |||| ||| |||| |||| || Sbjct 498 GGGATACCCTCCTTGTCCTGAATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGC-TC 556 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 ||| || ||||| || | |||||||| || || || |||||||| ||||| | ||| Sbjct 557 AACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCATTGTTGC 613 Score = 100 bits (110), Expect = 2e-16 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 ||||||| || |||||| ||||||||||||| ||||| || || | ||| || || || Sbjct 1 CGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCT 60 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGAT 27215 ||||| ||||| | |||| | || |||| |||| ||||| || | || || | Sbjct 61 GAATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGC-TCAACATCCAAGGTGATCGTC 119 Query 27216 TTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| |||||||| ||||| ||||||||||| Sbjct 120 TTGCCAGTCAGAGTCTTCACGAAGATTTGCAT 151 >seq1836 Length=11757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || | || ||||| |||||||| | ||||| ||||| |||||||||||||| Sbjct 11647 GCCACCTCTCAGGCGCAACACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGA 11706 Query 27080 CA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTG 27130 || ||| || |||| |||||||| || |||||| ||||||||||||| || Sbjct 11707 CAGCGTTCTGC-CGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTG 11757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424880871013632