Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3727 354 2e-92 seq4039 255 2e-62 seq4291 183 9e-41 seq3225 176 1e-38 seq4353 93.3 1e-13 seq3572 91.5 4e-13 seq10019 87.8 5e-12 >seq3727 Length=8307 Score = 354 bits (392), Expect = 2e-92 Identities = 499/697 (72%), Gaps = 4/697 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| |||| || || |||||||| || | || ||| |||| ||| ||||||| Sbjct 1786 GGTATTGATCTAGGAACCACGTATTCTTGCGTGGGGGTATGGAAAAACGATGGTGTAGAG 1727 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 ||||| || || |||||||| ||||||||||| || || || |||||||| ||||| || Sbjct 1726 ATAATAGCGAACGATCAAGGAAACAGAACAACACCTTCTTATGTTGCATTCACCGATACA 1667 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||| | | | || ||| | |||||||| |||| || || ||| ||||||| || Sbjct 1666 GAGAGACTTGTAGGAGATGCAGCAAAAAACCAAGTAGCAAGAAACCCAGAAAATACAGTA 1607 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 |||||||| || || | || || |||| ||| || | || ||| | ||| | Sbjct 1606 TTTGATGCAAAAAGATTAATAGGAAGAAAGTTTGACGATCCAGCTGTACAGGCAGATATG 1547 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 ||||| | ||||||||||| || | || | ||||||| |||| || || | Sbjct 1546 AAACACTGGCCTTTTACTGTGAAAGCAGGACCAGGAGGTAAACCACTTATAGAAGTAAAC 1487 Query 349505 TATAAAGGTGAACAAAAACAATTTTT-ACCC-GAAGAAATTTCATCAATGGTTTTAGTTA 349562 ||| |||| |||||||| || ||| |||| |||||||| ||| ||||||| ||| | | Sbjct 1486 TATCAAGG--AACAAAAAAAACATTTCACCCAGAAGAAATATCAGCAATGGTATTAATGA 1429 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||||| || || |||||||| | | |||| || ||| | || ||||| ||||| | Sbjct 1428 AGATGAAAGAGATAGCTGAAGCTTTTATAGGAAAAGAAGTCAAAGAAGCTGTAATTACAG 1369 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || || ||||| |||||| | || | |||||||||||||| || | || |||| Sbjct 1368 TTCCTGCATATTTCAATGATTCACAAAGACAAGCAACAAAAGATGCAGGTACTATAGCGG 1309 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 || | || || || | || || |||||||| || || ||||| ||||| ||||| | | Sbjct 1308 GGCTGAACGTATTACGTATTATAAATGAACCTACAGCAGCAGCTATTGCTTATGGTTTAG 1249 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 |||||| | | ||| | ||| | |||||||| ||| | || || |||||||||| Sbjct 1248 ATAAAAAAGGACATGGAGAGATGAATGTACTTATTTTCGATATGGGGGGAGGTACTTTTG 1189 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 | || || | || || | ||||| || || ||||| || ||||| || || || |||| Sbjct 1188 ACGTTTCTTTGCTTACTATAGAAGACGGTATCTTTGAGGTGAAAGCTACAGCAGGAGATA 1129 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 ||||| | || ||||||||||| || ||| | || || Sbjct 1128 CACATTTAGGGGGAGAAGATTTCGACAATAGACTTGT 1092 Score = 282 bits (312), Expect = 1e-70 Identities = 491/712 (69%), Gaps = 8/712 (1%) Strand=Plus/Minus Query 349958 AGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACT 350017 |||||| || | | ||||||| |||||| | || || | | ||||| || | Sbjct 959 AGAGCATTGAGAAGATTAAGAACACAATGTGAAAGAGCGAAAAGAACTTTATCTAGTAGT 900 Query 350018 ACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATT 350077 || ||| | |||| ||||| ||||| ||| ||| || | |||| || | ||| || Sbjct 899 ACACAAGCTACTATAGAAATAGATTCACTTTTTGAGGGTATTGATTACTCTGTTTCTCTT 840 Query 350078 ACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTG 350137 | |||||| | || |||||| | ||||||||| || ||| || | | ||||| Sbjct 839 TCTCGTGCTAGATTCGAAGAACTTTGTATGGATTACTTCAGAAACTCACTTGTACCTGTA 780 Query 350138 GAAAAAGTATTAAAAGATGCAAAAATGTCCAAA-AATCAGATTG---ATGAAGTAGTTTT 350193 || |||||| |||||||| | || | | || | | || ||||||| || || Sbjct 779 GAGAAAGTACTAAAAGAT----AGTGGTATAGATAAGCGAAGTGTACATGAAGTTGTATT 724 Query 350194 AGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGG 350253 || || || || ||| | || || || | ||||| | || || ||||||||||| Sbjct 723 GGTGGGAGGATCAACAAGAATACCGAAGATACAACAACTTATACAAGAATTTTTTAATGG 664 Query 350254 CAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCA 350313 |||||||||| | | || || ||||| ||||||||||||||||||||||| ||||| || Sbjct 663 AAAAGAACCTTGTCGTTCTATAAATCCTGATGAAGCTGTTGCATATGGTGCAGCTGTACA 604 Query 350314 GGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGT 350373 |||| |||| ||| ||| || ||||| || | | ||||| || | || ||||| Sbjct 603 GGCAGCTATATTAAAAGGAGTAAATAGTTCACAAGTACAAGATCTTTTGTTGCTTGATGT 544 Query 350374 AACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAG 350433 |||| ||||| ||||| ||||||| |||| | ||||||||| | || || Sbjct 543 TGCTCCTCTTTCTCTTGGTCTAGAAACAGCTGGAGGAGTAATGACGAAATTAATAGAAAG 484 Query 350434 AAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCC 350493 ||||| || | ||||||||||| || |||| || | |||| |||||| ||||| || Sbjct 483 AAATACAACAATTCCTACAAAAAAATCACAAATATTCACAACATATGCAGACAATCAACC 424 Query 350494 AGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACT 350553 | ||| || ||||| || || || ||| | || || |||||||||||| | | Sbjct 423 GGGTGTACTTATACAAGTTTTCGAGGGAGAAAGAGCAATGACAAAAGATAATAATTTATT 364 Query 350554 TGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGT 350613 || | ||| || || ||||| || || |||||||| || || || ||||| Sbjct 363 AGGCAAGTTTCATCTTGATGGTATTCCTCCTGCACCAAGAGGAGTACCCCAAATAGAAGT 304 Query 350614 CTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAA 350665 |||||||||| ||| ||||||| ||| | |||||||| ||| |||||| Sbjct 303 TACTTTCGATATAGATGCAAATGGCATTATGAATGTTACAGCAACAGAAAAA 252 Score = 262 bits (290), Expect = 1e-64 Identities = 492/714 (69%), Gaps = 12/714 (2%) Strand=Plus/Plus Query 182903 TTTTTCAAGTGCGCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAAT 182962 |||||| ||| ||||||| | ||| ||||| | || | ||| || | ||||| || Sbjct 252 TTTTTCTGTTGCTGTAACATTCATAATGCCATTTGCATCTATATCGAAAGTAACTTCTAT 311 Query 182963 CTGTGGAACACCTCGTGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATT 183022 || || || |||| ||| || ||||| ||| | | ||| | |||||| ||| Sbjct 312 TTGGGGTACTCCTCTTGGTGCAGGAGGAATACCATCAAGATGAAACTTGCCTAATAAATT 371 Query 183023 ATTATCTTTAGTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATT 183082 ||||||||| || ||||||| || || || | ||||| ||| || | || ||||| Sbjct 372 ATTATCTTTTGTCATTGCTCTTTCTCCCTCGAAAACTTGTATAAGTACACCCGGTTGATT 431 Query 183083 ATCACTATAAGTAGAAAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAAC 183142 || ||| || | || | ||| ||| || ||||||| |||| ||||| | Sbjct 432 GTCTGCATATGTTGTGAATATTTGTGATTTTTTTGTAGGAATTGTTGTATTTCTTTCTAT 491 Query 183143 -AATTACAGTCATTACTTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTA 183201 |||| | ||||||||| ||| || ||||||| || | || | || || ||||| | Sbjct 492 TAATTTC-GTCATTACTCCTCCAGCTGTTTCTAGACCAAGAGAAAGAGGAGCAACATCAA 550 Query 183202 GTAATAATAAATCTGATGTTTT--ATCTGATTTAATATCACTTAAAATTGCAGCTTGAAC 183259 | || || | |||| | || | || ||||| | | |||| || || || || || Sbjct 551 GCAACAAAAGATCTTGTACTTGTGAACT-ATTTACTC-CTTTTAATATAGCTGCCTGTAC 608 Query 183260 AGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATT 183319 ||||||||||||||||||||||||||| || || || |||||| | |||||| ||||| Sbjct 609 AGCTGCACCATATGCAACAGCTTCATCAGGATTTATAGAACGACAAGGTTCTTTTCCATT 668 Query 183320 AAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 |||||||||| | | |||||| || || || ||||| ||||| || || || ||||| Sbjct 669 AAAAAATTCTTGTATAAGTTGTTGTATCTTCGGTATTCTTGTTGATCCTCCCACCAATAC 728 Query 183380 TACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 ||||||| | | | | ||| || |||||||| ||||| || ||||| | Sbjct 729 AACTTCATGTACACTTCGCTTATCTATACCACTATCTTTTAGTACTTTCTCTACAGGTAC 788 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 | | ||||| || |||| ||||| | ||||| ||||| || | || ||||| || Sbjct 789 AAGTGAGTTTCTGAAGTAATCCATACAAAGTTCTTCGAATCTAGCACGAG--AAAGA-GA 845 Query 183500 aaaaaaG---TCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGA 183556 || | || |||||||| | | | | ||||| ||||| || | | ||||||| Sbjct 846 AACAGAGTAATCAATACCCTCAAAAAGTGAATCTATTTCTATAGTAGCTTGTGTACTACT 905 Query 183557 TGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCT 183610 ||||| |||||||| |||| ||||||| |||||||| || | |||| ||| Sbjct 906 AGATAAAGTTCTTTTCGCTCTTTCACATTGTGTTCTTAATCTTCTCAATGCTCT 959 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 || |||||||| || |||||||||||||| || || |||||||| || ||||| || ||| Sbjct 1104 TCGAAATCTTCTCCCCCTAAATGTGTATCTCCTGCTGTAGCTTTCACCTCAAAGATACCG 1163 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 ||||| ||| | | | || || ||||| ||||| || |||| ||| ||| Sbjct 1164 TCTTCTATAGTAAGCAAAGAAACGTCAAAAGTACCTCCCCCCATATCGAAA 1214 >seq4039 Length=7894 Score = 255 bits (282), Expect = 2e-62 Identities = 485/712 (68%), Gaps = 8/712 (1%) Strand=Plus/Plus Query 349958 AGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACT 350017 |||||| || | | |||||||| ||||||| | || || | | ||||| || | Sbjct 56 AGAGCATTGAGAAGACTAAGAACACAGTGTGAAAGAGCGAAAAGAACTTTATCGAGTAGT 115 Query 350018 ACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATT 350077 || ||| | |||| ||||| ||||| ||| ||| || | |||| || | ||| || Sbjct 116 ACACAAGCTACTATAGAAATAGATTCACTTTTTGAGGGTATTGATTACTCTGTTTCTCTT 175 Query 350078 ACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTG 350137 | |||||| | || |||||| | ||||||||| || ||| || | | ||||| Sbjct 176 TCTCGTGCTAGATTCGAAGAACTTTGTATGGATTACTTCAGAAATTCACTTGTACCTGTA 235 Query 350138 GAAAAAGTATTAAAAGATGCAAAAATGTCCAAA-AATCAGATTG---ATGAAGTAGTTTT 350193 || |||||||| || ||| | || | | || | | || ||||||| || || Sbjct 236 GAGAAAGTATTGAAGGAT----AGTGGTATAGATAAGCGAAGTGTACATGAAGTTGTATT 291 Query 350194 AGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGG 350253 || || || || ||| | || || || | ||||| | || || |||||||| || Sbjct 292 GGTGGGAGGATCAACAAGAATACCGAAGATACAACAACTTATACAAGAATTTTTTAACGG 351 Query 350254 CAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCA 350313 |||||||| | | | || || || |||||||| ||||||||||||||||| ||||| || Sbjct 352 AAAAGAACCATGTCGTTCTATAAACCCAGATGAGGCTGTTGCATATGGTGCAGCTGTACA 411 Query 350314 GGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGT 350373 |||| |||| ||| ||| || ||||| || | | ||||| || | || ||||| Sbjct 412 GGCAGCTATATTAAAAGGAGTAAATAGTTCACAAGTACAAGATCTTTTGTTGCTTGATGT 471 Query 350374 AACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAG 350433 |||| ||||| ||||| |||| || | || | || ||||| | || || Sbjct 472 TGCTCCTCTTTCTCTTGGTCTAGAGACAGCAGGAGGTGTGATGACGAAATTAATAGAAAG 531 Query 350434 AAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCC 350493 ||||| || | ||||||||||| || |||| || | |||| |||||| ||||| || Sbjct 532 AAATACAACAATTCCTACAAAAAAATCACAAATATTCACAACATATGCAGACAATCAACC 591 Query 350494 AGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACT 350553 | ||| || ||||| || || || ||| | || || |||||||||||| | | Sbjct 592 GGGTGTACTTATACAAGTTTTCGAGGGAGAAAGAGCAATGACAAAAGATAATAATTTATT 651 Query 350554 TGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGT 350613 || | ||| || || ||||| || || |||||||| || || || ||||| Sbjct 652 AGGCAAGTTTCATCTTGATGGTATTCCTCCTGCACCAAGAGGAGTACCCCAAATAGAAGT 711 Query 350614 CTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAA 350665 |||||||||| ||| ||||||| ||| | |||||||| ||| |||||| Sbjct 712 TACTTTCGATATAGATGCAAATGGCATTATGAATGTTACAGCAACAGAAAAA 763 Score = 248 bits (274), Expect = 3e-60 Identities = 489/714 (68%), Gaps = 12/714 (2%) Strand=Plus/Minus Query 182903 TTTTTCAAGTGCGCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAAT 182962 |||||| ||| ||||||| | ||| ||||| | || | ||| || | ||||| || Sbjct 763 TTTTTCTGTTGCTGTAACATTCATAATGCCATTTGCATCTATATCGAAAGTAACTTCTAT 704 Query 182963 CTGTGGAACACCTCGTGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATT 183022 || || || |||| ||| || ||||| ||| | | ||| | |||||| ||| Sbjct 703 TTGGGGTACTCCTCTTGGTGCAGGAGGAATACCATCAAGATGAAACTTGCCTAATAAATT 644 Query 183023 ATTATCTTTAGTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATT 183082 ||||||||| || ||||||| || || || | ||||| ||| || | || ||||| Sbjct 643 ATTATCTTTTGTCATTGCTCTTTCTCCCTCGAAAACTTGTATAAGTACACCCGGTTGATT 584 Query 183083 ATCACTATAAGTAGAAAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAAC 183142 || ||| || | || | ||| ||| || ||||||| |||| ||||| | Sbjct 583 GTCTGCATATGTTGTGAATATTTGTGATTTTTTTGTAGGAATTGTTGTATTTCTTTCTAT 524 Query 183143 -AATTACAGTCATTACTTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTA 183201 |||| | ||||| || ||| || || |||| || | || | || || ||||| | Sbjct 523 TAATTTC-GTCATCACACCTCCTGCTGTCTCTAGACCAAGAGAAAGAGGAGCAACATCAA 465 Query 183202 GTAATAATAAATCTGATGTTTT--ATCTGATTTAATATCACTTAAAATTGCAGCTTGAAC 183259 | || || | |||| | || | || ||||| | | |||| || || || || || Sbjct 464 GCAACAAAAGATCTTGTACTTGTGAACT-ATTTACTC-CTTTTAATATAGCTGCCTGTAC 407 Query 183260 AGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATT 183319 ||||||||||||||||||||| ||||||||||| || |||||| || |||||| || || Sbjct 406 AGCTGCACCATATGCAACAGCCTCATCTGGGTTTATAGAACGACATGGTTCTTTTCCGTT 347 Query 183320 AAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 |||||||||| | | |||||| || || || ||||| ||||| || || || ||||| Sbjct 346 AAAAAATTCTTGTATAAGTTGTTGTATCTTCGGTATTCTTGTTGATCCTCCCACCAATAC 287 Query 183380 TACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 ||||||| | | | | ||| || ||| || || ||||| || ||||| | Sbjct 286 AACTTCATGTACACTTCGCTTATCTATACCACTATCCTTCAATACTTTCTCTACAGGTAC 227 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 | | ||||| || |||| ||||| | ||||| ||||| || | || ||||| || Sbjct 226 AAGTGAATTTCTGAAGTAATCCATACAAAGTTCTTCGAATCTAGCACGAG--AAAGA-GA 170 Query 183500 aaaaaaG---TCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGA 183556 || | || |||||||| | | | | ||||| ||||| || | | ||||||| Sbjct 169 AACAGAGTAATCAATACCCTCAAAAAGTGAATCTATTTCTATAGTAGCTTGTGTACTACT 110 Query 183557 TGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCT 183610 ||||| |||||||| |||| |||||| ||||||||||| | |||| ||| Sbjct 109 CGATAAAGTTCTTTTCGCTCTTTCACACTGTGTTCTTAGTCTTCTCAATGCTCT 56 >seq4291 Length=7478 Score = 183 bits (202), Expect = 9e-41 Identities = 253/352 (72%), Gaps = 8/352 (2%) Strand=Plus/Minus Query 349508 AAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATG 349567 ||||| ||| |||| || || ||||| || ||||| | ||||| |||| || ||| Sbjct 4372 AAAGGGCAACCAAAAGAACTTGCTCCCGAGGAGGTTTCAGCTATGGTATTAGGAAAGATG 4313 Query 349568 AAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCA 349627 || ||| | || ||| ||| |||| | ||||| |||||||| |||||||||| Sbjct 4312 AAAGAAGTAGCAGAAAACTATCTAGGGAGAGAAGTAAAGAATGCTGTTGTTACTGTACCT 4253 Query 349628 GCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC-ATTGCGGGGTT 349686 || || ||||||||||| |||||| || ||||||||||| || ||| ||||| || | Sbjct 4252 GCATACTTTAATGATGCTCAGCGTCAAGCTACAAAAGATGCAGG-AGCTATTGCAGGTCT 4194 Query 349687 AAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 |||||| | | || || ||||||||||||||||| || ||||| ||||| || || || Sbjct 4193 TAATGTTATTCGGATCATCAATGAACCCACTGCTGCTGCTATTGCTTATGGTCTAGACAA 4134 Query 349747 AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGT 349806 || | | ||||||| ||| ||| ||| ||| | ||||||||||| || ||||| Sbjct 4133 AA------AAGATGAAAAAACTATACTTGTTTACGATCTTGGTGGTGGTACCTTCGATGT 4080 Query 349807 ATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || |||| | || | || | |||||||| | |||||| | ||| Sbjct 4079 GTCTGTACTCGTCATAGATAACGGCGTCTTTGAAGTCCATGCAACTTCAGGT 4028 Score = 154 bits (170), Expect = 4e-32 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 |||||||||||| | ||||| || | |||| | | |||||| || |||| ||| Sbjct 2513 TTTGAAGAATTAAATGCTGATCTATTCCAAAAAACATTAAAACCTGTGAAACAAGTTTTA 2454 Query 350150 AAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACA 350209 |||||||| | || ||| |||||| ||||| | ||| | ||||||||||| || Sbjct 2453 GAAGATGCAGATCTGAAGAAATCTCAGATAGATGAGATTGTTCTTGTTGGTGGTTCAACT 2394 Query 350210 CGTATTCCAAAAGTTCAACAG-TTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAG 350268 ||||||||||| | |||||| ||| || || ||||| || || |||||||| || Sbjct 2393 CGTATTCCAAAGATACAACAGCTTATTAAG-GAATTTTTCAACGGAAAAGAACCAAACAG 2335 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 | || ||||| ||||||||||||||||||||||| ||||||||||| |||| |||| Sbjct 2334 AGGCATCAATCCCGATGAAGCTGTTGCATATGGTGCAGCTGTTCAGGCTGGTATTCTATC 2275 Query 350329 TGGA 350332 ||| Sbjct 2274 CGGA 2271 Score = 125 bits (138), Expect = 2e-23 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 183242 TAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACG 183301 || ||| |||| |||||||||||||||||||||||||||||||| || || || | Sbjct 2277 TAGAATACCAGCCTGAACAGCTGCACCATATGCAACAGCTTCATCGGGATTGATGCCTCT 2336 Query 183302 AGATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGT 183361 | |||||| || || |||||||| || | ||||| || |||||||| | ||| Sbjct 2337 GTTTGGTTCTTTTCCGTTGAAAAATTCCTTAATAAGCTGTTGTATCTTTGGAATACGAGT 2396 Query 183362 TGAACCACCGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAA 183421 ||||||||| || | || | ||||| || | | ||| | | | || ||||| ||| Sbjct 2397 TGAACCACCAACAAGAACAATCTCATCTATCTGAGATTTCTTCAGATCTGCATCTTCTAA 2456 Query 183422 AACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCT 183481 ||||| || ||||| | | |||||| |||| ||| | ||| ||||| ||| | Sbjct 2457 AACTTGTTTCACAGGTTTTAATGTTTTTTGGAATAGATCAGCATTTAATTCTTCAAATTT 2516 Query 183482 TGCTCTAGTTAA 183493 ||| | |||||| Sbjct 2517 TGCACGAGTTAA 2528 >seq3225 Length=28280 Score = 176 bits (194), Expect = 1e-38 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| | | | ||||| | |||||| ||||| ||||| |||||||| | Sbjct 145 TTTGCATGCCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGT 204 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | |||| |||||||| || ||||||||||| || || ||||| ||||||| Sbjct 205 AGTCGGACAGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGAT 264 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| ||||| || |||||||| || ||||| || || || || | ||| |||| Sbjct 265 CAGGAGGAATACCTTCCTTGTCCTGAATCTTTGCTTTCACGTTTTCGATGGTATCTGATG 324 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || || || | ||||| || || || || || ||||| || ||||| Sbjct 325 GCTCAACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 379 Score = 111 bits (122), Expect = 5e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || ||||| || || || ||||| ||||||||||||||||| ||||| || |||||| Sbjct 3 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 62 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || ||||| || || ||||| | ||| ||||| ||||| || | || | ||||| Sbjct 63 ATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCTTG 122 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || ||||| Sbjct 123 CCAGTCAGAGTCTTCACGAAGATTTGCAT 151 >seq4353 Length=7185 Score = 93.3 bits (102), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || ||||| | ||||||||| ||||| |||||||||||||||| || ||||| Sbjct 6302 CGGGGAACACCGAGAGTAACATTC---TTAGAACCAACACCAGCAAAGTGAAATGTATTT 6246 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | ||| || | ||||||||||| || || || |||||| | ||||| |||| Sbjct 6245 AGAGTCATTTGTGTTGCTGGCTCACCAATAGATTGAGCAGCAATAGCACCAACACATTCT 6186 Query 377578 CC 377579 || Sbjct 6185 CC 6184 Score = 87.8 bits (96), Expect = 5e-12 Identities = 133/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 379248 TTCTTCATCTTGAGGCATATGAAGATTCATTTCATCACCATCAAAATCAGCATTATATGG 379307 ||||||| ||| | | ||| |||||||||||||| |||||||||||||||||||| || Sbjct 975 TTCTTCACTTTGTGCGAGATGTAGATTCATTTCATCTCCATCAAAATCAGCATTATAAGG 916 Query 379308 CTTAGTATCTCCTACATTCATTCTAAAAGTATCACCTTGATATAAAATTTTAACAATATG 379367 |||| | || ||| | || || ||| | | | ||||| |||| ||| Sbjct 915 AGAAGTAACAGATAAATTTAGTCGGAATGTAGAA---TAAGGTAAAACACGAACACGATG 859 Query 379368 ACACATCATTGATAATCTATGAAGTGTAGGCTGACGATTAAATAAGACACCATCCCCATC 379427 || ||| || || | | |||| | | ||| || | ||||||||| ||| ||| ||||| Sbjct 858 ACCCATAATAGACATTTTATGTAAAGAAGGTTGCCTATTAAATAATACATAATCACCATC 799 Query 379428 CATCATATG 379436 |||||| Sbjct 798 TTGCATATG 790 >seq3572 Length=8609 Score = 91.5 bits (100), Expect = 4e-13 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGGCGA-AAG-CCTCG 423823 ||| ||||| ||||| ||||||||| | |||||| ||| |||| ||| | ||| ||||| Sbjct 3327 GCACGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACAGAAGTCCTCG 3268 Query 423824 TGGGTTCAAACCCCACTCCGTGCATTT 423850 |||||||||| |||||||||||||||| Sbjct 3267 TGGGTTCAAATCCCACTCCGTGCATTT 3241 >seq10019 Length=38691 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || | | || || Sbjct 37173 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGTACGTCCGCG 37232 Query 423824 TGGGTTCAAACCCCACTCCGTGCATTTATT 423853 |||||||||| |||||| ||||||||| || Sbjct 37233 TGGGTTCAAATCCCACTTCGTGCATTTTTT 37262 Score = 84.2 bits (92), Expect = 7e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || | | || || Sbjct 37859 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGTACGTCCGCG 37918 Query 423824 TGGGTTCAAACCCCACTCCGTGCAT 423848 |||||||||| |||||| ||||||| Sbjct 37919 TGGGTTCAAATCCCACTTCGTGCAT 37943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515053734859808