Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3225 170 2e-37 seq7329 102 9e-17 seq3240 102 9e-17 >seq3225 Length=28280 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || |||||||| || ||||| || |||||| || Sbjct 379 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCA 320 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| |||| || || |||||||||||||| || |||||||| || ||| Sbjct 319 GATACCATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 260 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| || || || || |||| | | || || | ||||| ||| Sbjct 259 CAGCGTCTCATTTTCGCTGGAAAACAGCTAGAAGATGGTAGAACGCTGTCCGACTACAAT 200 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || |||||| |||| | || || | ||||| Sbjct 199 ATTCAGAAAGAATCTACCCTTCATTTAGTTCTTCGCCTGAGAGGTGG 153 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||||||||| || |||||||| || ||||| || |||||| || Sbjct 608 AATGCAGATCTTTGTCAAGACGCTCACGGGCAAGACCATCACTCTGGATGTTGAGCCATC 549 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | || |||| || || ||||||||||||||||| || ||||| ||||| Sbjct 548 AGATACTATAGAGAACGTGAAAGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCA 489 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| || || ||||| || || |||| | || || | ||||| || Sbjct 488 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTGTCCGACTACAA 429 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || |||||||| || | || || | ||||| Sbjct 428 CATTCAGAAAGAATCTACCCTTCATCTGGTACTCCGCCTGAGAGGTGG 381 Score = 132 bits (146), Expect = 5e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || |||||||| || || | || |||||| || Sbjct 151 ATGCAAATCTTCGTGAAGACTCTGACTGGCAAGACGATCACCTTGGATGTTGAGCCATCA 92 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| |||| || || |||||||||||||| || |||||||| || ||| Sbjct 91 GATACCATTGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 32 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 |||||||| ||||| || || ||||| |||| Sbjct 31 CAGCGTCTCATTTTCGCCGGAAAGCAGCTCG 1 >seq7329 Length=3219 Score = 102 bits (112), Expect = 9e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || ||||| ||||||||||| ||||| ||||| || ||||| | ||||| ||||| || Sbjct 2825 GAGATGAAAGTGGCGCAGCTTTCGGGATACGTTGCGGAGCAGAGCGCCTACCACCATGGA 2884 Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166 ||| ||| || ||| || || ||| | | || ||| ||||| || || ||| Sbjct 2885 GAGCAGTCACTGCAGCAAACTATCATCACCATGGCGCAGCGGTTTGTAGGCAGCAACAAC 2944 Query 32167 CTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCT 32226 || ||||| || |||||| ||||| ||||| | || | || || || ||||| Sbjct 2945 CTTAACTTTCTGGAGCCAGTAGGACAATTTGGCTCTCGAAAAGAAGGAGGAAAAGATGCC 3004 Query 32227 GCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCG 32270 | | ||||||||||||||||| || ||||| | ||||| Sbjct 3005 TCTGCCCCCCGTTACATCTTCACCAAGCTTGCACCCTACACGCG 3048 >seq3240 Length=9657 Score = 102 bits (112), Expect = 9e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || ||||| ||||||||||| ||||| ||||| || ||||| | ||||| ||||| || Sbjct 7027 GAGATGAAAGTGGCGCAGCTTTCGGGATACGTTGCGGAGCAGAGCGCCTACCACCATGGA 7086 Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166 ||| ||| || ||| || || ||| | | || ||| ||||| || || ||| Sbjct 7087 GAGCAGTCACTGCAGCAAACTATCATCACCATGGCGCAGCGGTTTGTAGGCAGCAACAAC 7146 Query 32167 CTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCT 32226 || ||||| || |||||| ||||| ||||| | || | || || || ||||| Sbjct 7147 CTTAACTTTCTGGAGCCAGTAGGACAATTTGGCTCTCGAAAAGAAGGAGGAAAAGATGCC 7206 Query 32227 GCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCG 32270 | | ||||||||||||||||| || ||||| | ||||| Sbjct 7207 TCTGCCCCCCGTTACATCTTCACCAAGCTTGCACCCTACACGCG 7250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570236715896320