Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq1765 84.2 2e-11 seq6188 82.4 8e-11 seq747 82.4 8e-11 >seq1765 Length=12274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 27083 ACGCCTTCTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGA 27142 |||||| |||||| |||||||||| ||| |||| | |||||||| ||||||||||||||| Sbjct 4074 ACGCCTCCTTAGCACAGTTGGTAGTGCGTTTGATTCGTAATCAAAAGGTCGTGGGTTCGA 4133 Query 27143 ATCCTACAG 27151 ||| |||| Sbjct 4134 TTCCCACAG 4142 >seq6188 Length=4456 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 27084 CGCCTTCTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAA 27143 ||||| |||||| |||||||||| ||| |||| | |||||||| ||||||||||||||| Sbjct 4167 CGCCTCCTTAGCACAGTTGGTAGTGCGTTTGATTCGTAATCAAAAGGTCGTGGGTTCGAT 4226 Query 27144 TCCTACAG 27151 ||| |||| Sbjct 4227 TCCCACAG 4234 >seq747 Length=1133 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 27084 CGCCTTCTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAA 27143 ||||| |||||| |||||||||| ||| |||| | |||||||| ||||||||||||||| Sbjct 867 CGCCTCCTTAGCACAGTTGGTAGTGCGTTTGATTCGTAATCAAAAGGTCGTGGGTTCGAT 926 Query 27144 TCCTACAG 27151 ||| |||| Sbjct 927 TCCCACAG 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519760038325760