Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3225 181 2e-40 >seq3225 Length=28280 Score = 181 bits (200), Expect = 2e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || || ||||| || ||||| || || | || ||||| |||||| Sbjct 396 AGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTCCTGCCATCT 455 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || || || || ||||||||||| | || ||||||||| Sbjct 456 TCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 515 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| ||||||||| || || || || || ||||| || |||||||| ||| Sbjct 516 TGAATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGCTCAACATCCAGAGTGATGGTC 575 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || |||||||| ||||| ||||| | ||||||| Sbjct 576 TTGCCCGTGAGCGTCTTGACAAAGATCTGCATT 608 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || || ||||| || || || || || | || || || |||||||| ||||| Sbjct 177 TGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGACAGCGTTCTACCATCTTCTAGCTGT 236 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| || || || || || |||||||||| |||||||||||||| |||||| Sbjct 237 TTTCCAGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTT 296 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||||||||||||| || || ||||| || |||||||| ||||| || || Sbjct 297 GCTTTCACGTTTTCGATGGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGTC 356 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| | ||||| Sbjct 357 AGAGTCTTCACAAAGATTTGCAT 379 Score = 125 bits (138), Expect = 2e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || ||||| || || || || || |||||||||| |||||||||||||| Sbjct 3 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 62 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 |||||| |||||||||||| ||||| || || ||||| || | ||||||||||| Sbjct 63 ATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCTTG 122 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || || | ||||| Sbjct 123 CCAGTCAGAGTCTTCACGAAGATTTGCAT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158998493500640