Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3225 91.5 1e-13 >seq3225 Length=28280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | ||| | |||| ||| || || ||||| || || || || || Sbjct 377 CATGCCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTC 436 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || ||||| | | || || ||||| ||||| || || || |||||||||||||| | Sbjct 437 GGACAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGG 496 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | | ||| |||||| ||| | | || ||| | || | | ||||| | || Sbjct 497 AGGGATACCCTCCTTGTCC-TGAATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGCT 555 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||||| | || ||||| ||||| || |||||||| ||||| Sbjct 556 CAACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCAT 607 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | ||| | || ||||| || || ||||| || ||||| || || Sbjct 149 CATGCCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTC 208 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || |||| | || || |||||||| || || || || ||||||||||| || | Sbjct 209 GGACAGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGG 268 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | | || |||||| ||| | | || ||| | | | | ||||| | || Sbjct 269 AGGAATACCTTCCTTGTCC-TGAATCTTTGCTTTCACGTTTTCGATGGTATCTGATGGCT 327 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||||| | || || ||||| || || |||||||||||||| Sbjct 328 CAACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429491490140768