Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3225 154 4e-32 >seq3225 Length=28280 Score = 154 bits (170), Expect = 4e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| || | |||||| |||| || ||||| |||||||||||||| Sbjct 177 TGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGACAGCGTTCTACCATCTTCTAGCTGT 236 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || || || || || || || ||||||||||||||||| || |||||| Sbjct 237 TTTCCAGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTT 296 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||| ||||||||| ||||| | || || || | ||||| |||||||| ||| Sbjct 297 GCTTTCACGTTTTCGATGGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGTC 356 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||| || | || | |||||| Sbjct 357 AGAGTCTTCACAAAGATTTGCAT 379 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || || |||||||| || | ||||| |||| || || || |||||| Sbjct 396 AGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTCCTGCCATCT 455 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || ||||| || || ||||| |||||||| Sbjct 456 TCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 515 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||||| || || || ||||| | || || || | ||||| ||| Sbjct 516 TGAATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGCTCAACATCCAGAGTGATGGTC 575 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 576 TTGCCCGT 583 Score = 116 bits (128), Expect = 9e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||| || ||||| || || || || || || || ||||||||||||||||| || Sbjct 3 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 62 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| ||||| ||| ||||| ||||| | || || || || |||||||||||| Sbjct 63 ATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCTTG 122 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||| ||| || | ||| | |||||| Sbjct 123 CCAGTCAGAGTCTTCACGAAGATTTGCAT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192373273093184