Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3103 131 2e-25 seq4538 98.7 1e-15 >seq3103 Length=10288 Score = 131 bits (144), Expect = 2e-25 Identities = 394/609 (65%), Gaps = 26/609 (4%) Strand=Plus/Plus Query 77406 GCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCA 77465 ||||| |||| | |||||||| || || || ||||| | | || ||||| Sbjct 366 GCTTCGCATGCAGCATAATAAATACACTCAAAGATAGATTTATTTAATTGTTTAGCTTCT 425 Query 77466 ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATA 77525 ||| |||||| || || | ||| | || |||| | || |||| ||||| || || ||| Sbjct 426 ATAGAATCAAATGGGTATTTTAATATAAGAAAGACGTCAGCTAGGCCCTGTACACCTATA 485 Query 77526 CCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATG 77585 || || ||||| ||| | || ||| | | || || || | |||||| | || | Sbjct 486 CCTATGGGTCTGTGTTTTTTGTTGCTCTCTCTCGCCTCGGGGAGAGGATAGAAGTTGTTA 545 Query 77586 TCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAA 77645 ||||| |||||||| |||||| | | ||| || || | | |||| | | ||| Sbjct 546 TCTATTATTTTATTTAGATTTATGGTGATTACCTTTACTATATATTTTAATAGAGAGAAA 605 Query 77646 TCAAA-------------------TCTTCCATCTATA-ACAAACATGTTCAAAGCTATAG 77685 ||||| | ||| | | || ||| | || |||| ||||| Sbjct 606 TCAAAGAAATATTTATTTGTTTTTTTTTCTTTTTTTATACATTTAGGT--AAAGATATAG 663 Query 77686 ATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATA 77745 ||||||| ||||| || ||||| || | || | |||||||||||| || ||||| Sbjct 664 ATGCTAGGTTACATACAGCTACTTCTTCTTTATTTGTATATTGTATTATTTCACAACATA 723 Query 77746 GATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCT 77805 |||||| || ||| || | || |||||| || |||||| ||||||||| || | Sbjct 724 AATTACTCGATCGTATACACCCTAAATGTTGTTGATTACTCTTTCTATTGCATGCATCTT 783 Query 77806 TATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATT--TCCAGAC 77863 |||| | ||| | || || || || || ||||||| || ||||| | | ||| | Sbjct 784 TATATAACATATATGGTGTTCCTGTCTCTATCTGTGCTT--GTAATATACTAAACCATAG 841 Query 77864 GACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCG 77923 | ||||||||| | | | ||| | ||||| || |||| |||||| Sbjct 842 TTTTTGTGCTTTTATCTTTCTTCTCCCTCGACCCTCTCGCTCGTATTTTTTATATAAATT 901 Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 | ||| || || |||||| ||| || |||||||| || |||| |||||||| | Sbjct 902 ATTAAACTCTTCACCCCAACATTCAGTTAAACCAGGGCACTCGCTTGGACACATCAACGT 961 Query 77984 CCAGTCACC 77992 |||||| || Sbjct 962 CCAGTCCCC 970 >seq4538 Length=22927 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA 48608 ||||||||||| || ||||| |||||||||||||||| || ||| || | || | Sbjct 10581 CTAGCAGCAAAGAAAGCTAAAACATGTTTAATAAAATGTTGTTCTTTTTCATCGAGACGA 10640 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 |||||| ||| ||| ||||||| |||||| || |||||||| || || ||| Sbjct 10641 GCCCAGTCTGTGAGGTCTGCATGCATATCTATTTCTTCTGCAGTCCAAAAGGAAGCTTCT 10700 Query 48669 GCTTTTTTATACATATTCCATA 48690 ||||| |||||||||| ||||| Sbjct 10701 GCTTTCTTATACATATCCCATA 10722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694579048791040