Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3225 168 1e-36 seq4538 89.7 1e-12 >seq3225 Length=28280 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| ||||||||||| | || |||||| || ||||||||||| | Sbjct 381 CCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAC 440 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | |||||| || || || || ||||| || || | ||| || |||||| || Sbjct 441 AGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGG 500 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| || ||||||||||| ||| | || ||||| || || | || || Sbjct 501 ATACCCTCCTTGTCCTGAATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGCTCAACA 560 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || |||||||| ||||| ||||| | ||||| || || ||||||||| Sbjct 561 TCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCATT 608 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||||||| || | ||| | || |||||| || || |||||||| | Sbjct 153 CCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGAC 212 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | ||||| ||||| ||||| || || || || | ||| || || ||| ||| Sbjct 213 AGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGGAGGA 272 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| |||||||| || ||||||||||| ||| | ||||| || || || | || || Sbjct 273 ATACCTTCCTTGTCCTGAATCTTTGCTTTCACGTTTTCGATGGTATCTGATGGCTCAACA 332 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| |||||| || || || ||||| Sbjct 333 TCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 379 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || ||||| || || | ||| || || ||| |||||||| |||||||| || Sbjct 3 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 62 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||||||||| ||| | || || || || || | || || || | ||||||||||| Sbjct 63 ATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCTTG 122 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||| |||||| ||||| || ||||| Sbjct 123 CCAGTCAGAGTCTTCACGAAGATTTGCAT 151 >seq4538 Length=22927 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 230061 TCGAACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCA-ATTTGGCGAGGTCT--TG 230117 || |||||||| |||||| | || ||||||||||| ||| |||| | || | || | Sbjct 9005 TCAAACGAATTGATCAGCCGTGATGAAGGTCTTCAT--GCAGATTTCG-GATGCCTCATA 8949 Query 230118 TATTCGAAGCTAAATAACAAACTACCTTTCGAAACGGTGAAACAAATCGTCACAGAAGTA 230177 ||||| | |||||| || ||| || ||| | || ||||||||| ||||| | Sbjct 8948 TATTCAATGCTAAAAAATCGACTTTCTAAAGAAGTTTTAAATAAAATCGTCAAAGAAGCA 8889 Query 230178 GTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAA 230236 |||| | |||||| | ||| ||||| || ||| |||| ||| ||| ||||||||||| Sbjct 8888 GTTGAAGTTGAAAAAGCGTTTATTTGTGATGCTCTTCCCTGCGATCTCATCGGCATGAA 8830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046600580327744