Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3225 120 2e-22 >seq3225 Length=28280 Score = 120 bits (132), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||||||| | | ||||| ||||| || || || || |||||||| Sbjct 374 TTGCATGCCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTA 433 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| | | || ||||||||||| ||||| || || | ||||||||| || Sbjct 434 GTCGGACAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTC 493 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | ||| | ||| ||||| ||| ||||| ||||| | |||| |||| || || | | Sbjct 494 AGGAGGGATACCCTCCTTGTCCTGAATCTT-TGCTTTCACGTTCTCTATAGTATCTGATG 552 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || ||||| |||||||| ||||| || ||||| ||||| Sbjct 553 GCTCAACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCAT 607 Score = 107 bits (118), Expect = 1e-18 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || || | |||||||||||| | ||| | ||||||||| ||| Sbjct 3 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 62 Query 44249 ATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| |||| || | ||||| || | | || || |||| || |||||||| Sbjct 63 ATCTT-TGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCTT 121 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||||||||||||||||||| Sbjct 122 GCCAGTCAGAGTCTTCACGAAGATTTGCATG 152 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||||||| | | || | ||||| || || || || || ||||| Sbjct 146 TTGCATGCCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTA 205 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || | | || || ||||| || || || || || | |||||||||||| Sbjct 206 GTCGGACAGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATC 265 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGG 44282 | ||| | ||||||||| ||| ||||| ||| |||| || | ||||| || | | Sbjct 266 AGGAGGAATACCTTCCTTGTCCTGAATCTT-TGCTTTCACGTTTTCGATGGTATCTGATG 324 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| || || ||||| || || || |||||||| |||||||||||| Sbjct 325 GCTCAACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCATG 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359945052009312