Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3225 158 3e-33 >seq3225 Length=28280 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| ||||| || || || || ||||| || || || || ||||| Sbjct 376 CAAATCTTTGTGAAGACTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCAGAT 317 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| ||||||||||||||| ||||| || ||||| || ||||| Sbjct 316 ACCATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAG 257 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||||||||| |||||||| || || || |||| || || | Sbjct 256 CGTCTCATTTTCGCTGGAAAACAGCTAGAAGATGGTAGAACGCTGTCCGACTACAATATT 197 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||| || || ||| | ||| Sbjct 196 CAGAAAGAATCTACCCTTCATTTAGTT 170 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| || || || || ||||| Sbjct 604 CAGATCTTTGTCAAGACGCTCACGGGCAAGACCATCACTCTGGATGTTGAGCCATCAGAT 545 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||||||||||||||| || || |||||||| |||||||| Sbjct 544 ACTATAGAGAACGTGAAAGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAG 485 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| |||||||| ||||| || |||| || ||| | Sbjct 484 CGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTGTCCGACTACAACATT 425 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || || ||||| || Sbjct 424 CAGAAAGAATCTACCCTTCATCTGGT 399 Score = 132 bits (146), Expect = 1e-25 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||||| || || || ||||||||| | || || || ||||| Sbjct 148 CAAATCTTCGTGAAGACTCTGACTGGCAAGACGATCACCTTGGATGTTGAGCCATCAGAT 89 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| ||||||||||||||| ||||| || ||||| || ||||| Sbjct 88 ACCATTGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAG 29 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCG 178071 || || || ||||||||||| ||||||| Sbjct 28 CGTCTCATTTTCGCCGGAAAGCAGCTCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203571789877184