Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3225 114 1e-20 >seq3225 Length=28280 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| || || || ||||||||||| |||||||| || || | | || || Sbjct 399 ACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTCCTGCCATCTTCC 458 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||||||||| || || ||||| ||||| | || | | |||||||||| || Sbjct 459 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC-TG 517 Query 41774 ATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | ||||||| ||| | | ||| || | ||| || |||| || || || || Sbjct 518 AATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGCTCAACATCCAGAGTGATGGTCTT 577 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| |||||||| || || |||||||| Sbjct 578 GCCCGTGAGCGTCTTGACAAAGATCTGCAT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462244270323200