Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2272 107 2e-18 seq550 86.0 6e-12 >seq2272 Length=181047 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || || ||||||||||| ||||||| ||| | Sbjct 120856 AAGATGCAGATCTTCGTGAAGACCCTTACAGGAAAAACCATCACTCTCGACGTGGAACCT 120915 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | ||| | |||| ||||| | ||||| ||||||||||| | || Sbjct 120916 TCCGACACCATCGAAAATGTGAAGGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGAT 120975 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || || || || |||| | || || || ||| Sbjct 120976 CAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTAC 121035 Query 40867 AACATCCAGAAGGA 40880 ||||| |||||||| Sbjct 121036 AACATTCAGAAGGA 121049 >seq550 Length=33001 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 116637 TGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGT 116696 ||||| |||||||||||| ||||| || || || |||||| ||| || | ||| || Sbjct 211 TGTGGAACATGTACAAAAAAGCCGAAGCTTCTTTTTGGACCACCGAAGAAATCGACATGA 152 Query 116697 CCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACG 116756 ||| | |||||||| ||| || |||||||| || |||||||| |||| Sbjct 151 GTGCCGACTTGGCCGACTGGGCCACTTTGGACTCCAACGAGCAGCACTTCATCAAACACG 92 Query 116757 TGCTGGCCTTTTTCGCCGCCAG 116778 | |||||||| ||||||||||| Sbjct 91 TCCTGGCCTTCTTCGCCGCCAG 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195326030320