Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3418 122 6e-23 seq1882 122 6e-23 seq2272 104 2e-17 >seq3418 Length=21158 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||||| ||| | ||| |||||||| |||||||| || ||| Sbjct 210 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 269 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| | |||| |||| ||||||||| ||||| || || |||||||| || || Sbjct 270 AGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 329 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | || | || | || | || || || Sbjct 330 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACA 389 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || ||||| ||||||||||||||||| Sbjct 390 TCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 436 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||| || |||||| | |||| |||| ||||||||| ||||| Sbjct 18 TCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCGGCGAAG 77 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||| || || | || ||||||||| |||||| ||| | || Sbjct 78 ATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTC 137 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || || | |||||||| || || ||||| || |||||| Sbjct 138 TCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACA 197 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 198 AAGATCTGCAT 208 >seq1882 Length=48858 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||||| ||| | ||| |||||||| |||||||| || ||| Sbjct 48481 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 48540 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| | |||| |||| ||||||||| ||||| || || |||||||| || || Sbjct 48541 AGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 48600 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | || | || | || | || || || Sbjct 48601 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACA 48660 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || ||||| || ||||||||||||||||| Sbjct 48661 TCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 48707 >seq2272 Length=181047 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| | || ||||| ||||| |||||||| || || || | | |||| || Sbjct 121067 ACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCA 121008 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGC 34299 | ||||| |||||||| || || |||||||| || | |||| | || ||||||||| Sbjct 121007 AGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGG-ATGCCCTCCTTGTCTTG 120949 Query 34300 TATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 || || ||| | || | || | |||| | ||| ||||| | ||||||||||| Sbjct 120948 GATTTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTT 120889 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || ||||| |||||||||||| Sbjct 120888 TCCTGTAAGGGTCTTCACGAAGATCTGCATC 120858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323057403909920