Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1882 116 3e-21 seq3418 114 1e-20 seq2272 87.8 1e-12 >seq1882 Length=48858 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||||||| || || ||| |||||||||||||| || Sbjct 48480 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 48539 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| | |||| ||||| || || || ||||| |||| ||||| || || ||||| Sbjct 48540 CAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 48599 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||| ||| ||| || | | | | |||| |||||| Sbjct 48600 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCAC 48659 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | || || ||||| ||||| || |||||||||||||| |||||| Sbjct 48660 ATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATG 48708 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||||||| || || ||| |||||||||||||| || Sbjct 48708 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 48767 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| | | || ||||| || || |||||||| |||| ||||| || || ||||| Sbjct 48768 CAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGG 48827 Query 45229 CACACCCTCCTTGTCCGCAATTTTT 45253 | |||||||||||| ||| ||| Sbjct 48828 AATGCCCTCCTTGTCCTGAATCTTT 48852 >seq3418 Length=21158 Score = 114 bits (126), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||||||| || || ||| |||||||||||||| || Sbjct 209 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 268 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| | |||| ||||| || || || ||||| |||| ||||| || || ||||| Sbjct 269 CAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 328 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||| ||| ||| || | | | | |||| |||||| Sbjct 329 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCAC 388 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCA-TGTTG 45340 || | || || ||||| || || ||||||||||||||||| |||| ||||| Sbjct 389 ATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATTGTTG 441 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||||||| || || ||| |||||||||||||| || ||| | |||| |||| Sbjct 1 CCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCA 60 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || |||||||| |||| ||||| || || ||||| | |||||||||||| || Sbjct 61 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 120 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | ||| ||| || | | | | |||| |||||| || | || || ||||| | Sbjct 121 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCC 180 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || |||||||||||||| |||||| Sbjct 181 CCGTGAGGGTCTTCACAAAGATCTGCATG 209 >seq2272 Length=181047 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||||| ||||||||||||||||| || || | |||| || Sbjct 121068 TACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATC 121009 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| ||||| ||||| || | ||||| || || || || | ||||||||||| Sbjct 121008 AAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTG 120949 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| ||| || | | | |||| | ||||| || | || || || || Sbjct 120948 GATTTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTT 120889 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || || |||||||| ||||| ||||| || Sbjct 120888 TCCTGTAAGGGTCTTCACGAAGATCTGCATCTT 120856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395057350872847