Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3418 129 5e-25 seq1882 122 8e-23 seq2272 120 3e-22 seq620 87.8 2e-12 >seq3418 Length=21158 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| ||||| || || ||||| |||| || || ||||| Sbjct 436 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 377 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| | ||||||||| ||| | || || || || Sbjct 376 GACACCATCGAGAATGTGAAGGCAAAGATTCA-GGACAAGGAGGGCATTCCTCCTGATCA 318 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| |||| ||| | ||| || ||||| || Sbjct 317 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAA 258 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| ||||| || || ||||| |||| || | ||||| || || Sbjct 257 CATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 210 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || || || || ||||| |||| || || ||||| Sbjct 209 CATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTC 150 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || || || ||| | ||||||||| ||| | || || || | Sbjct 149 AGACACCATCGAGAATGTGAAGGCAAAGATTCA-GGACAAGGAGGGCATTCCTCCTGATC 91 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || ||||| ||||| ||| |||| ||| | ||| || ||||| | Sbjct 90 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACA 31 Query 31371 ACATTCAAAAAGAATCGACTCTTCA 31395 ||||||| ||||| || || ||||| Sbjct 30 ACATTCAGAAAGAGTCTACCCTTCA 6 >seq1882 Length=48858 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || || || || ||||| |||| || || ||||| Sbjct 48708 CATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTC 48649 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || || || ||| | ||||||||| ||| | || || || | Sbjct 48648 AGACACCATCGAGAATGTGAAGGCAAAGATTCA-GGACAAGGAGGGCATTCCTCCTGATC 48590 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || ||||||||||| ||| |||| ||| | ||| || ||||| | Sbjct 48589 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACA 48530 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||| ||||| || || ||||| |||| || | ||||| || || Sbjct 48529 ACATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 48481 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| ||| | || || || ||||||||||| || ||||| ||||| ||| |||| Sbjct 48843 GGACAAGGAGGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGA 48784 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || | ||| || ||||| |||||||| ||||| || || ||||| |||| || Sbjct 48783 GGATGGAAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCACTTGGTGCT 48724 Query 31405 TAGACTGAGGGGCGG 31419 | ||||| || || Sbjct 48723 GCGCCTGAGAGGTGG 48709 >seq2272 Length=181047 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 || || ||||| || ||||| ||||| || ||||| ||||| ||||| ||||||| ||| Sbjct 120853 TCTAAGATGCAGATCTTCGTGAAGACCCTTACAGGAAAAACCATCACTCTCGACGTGGAA 120912 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || ||||||| |||||| || || | ||| |||||||| ||| | ||||| Sbjct 120913 CCTTCCGACACCATCGAAAATGTGAAGGCCAAAATCCAAGACAAGGAGGGCATCCCGCCT 120972 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 || ||||||||||| || ||||| || || || | || ||| | |||| | ||| Sbjct 120973 GATCAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGAT 121032 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || |||||||| || ||| || ||||| ||||| Sbjct 121033 TACAACATTCAGAAGGAAAGCACCCTTCACTTGGTA 121068 >seq620 Length=258453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 ||||| |||| || || || || ||||| | ||| ||| || || || || |||| Sbjct 180866 ACGCGCTTCATGAAGAGGTCGGGAATCCACAAGGCGGGGAAAAGGTCTCGAGCTCGCATT 180807 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAAT--CCAAAAAGTCCAACACGTCCGCATGCCACG 23462 |||||||||||| ||| ||| | ||| ||| ||| || || | ||| |||||||||| Sbjct 180806 TCCTCTTTGCCGTGGTT--TTTGCGAATTTCCAGAAACTCAAAAATGTCTGCATGCCACG 180749 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGT-CTCTTATTGCCGCCCTGATCGACGTAACGG 23521 |||| | ||| || || | || ||| | | ||| ||| ||||| || ||||| || Sbjct 180748 GCTCCACGTACACCGC-GAGGCTCCCCTTCCGCTTGCCGCCCCCCTGGTCCACGTACCGC 180690 Query 23522 GCCGTGTTGTTGTACACTCT 23541 | || || |||| |||| || Sbjct 180689 GACGCGTCGTTGAACACCCT 180670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445745744299440