Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3418 109 5e-19 seq1882 109 5e-19 >seq3418 Length=21158 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || ||||||| ||||||||||| |||||||| ||||| Sbjct 209 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 268 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||| || ||||| || ||||| |||||||||| |||||||| ||||| Sbjct 269 CAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 328 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | |||| || | | || | ||||| | ||||||| Sbjct 329 AATGCCCTCCTTGTC-CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCA 387 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | ||||| || || | || || || || || ||||| Sbjct 388 CATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 436 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 139559 AAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGC 139618 ||||||| ||||||||||| |||||||| ||||| || || || ||| || ||| Sbjct 3 AAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGC 62 Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678 || || || || |||||||||| |||||||| ||||| ||||| || ||||| ||| | Sbjct 63 TGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC-CTGAAT 121 Query 139679 TTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCC 139737 |||| || | | || | ||||| | |||||||| || | || | ||||| || Sbjct 122 CTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCC 181 Query 139738 GGTCAACGTTTTTACGAATATTTGCAT 139764 || | || || || || || ||||| Sbjct 182 CGTGAGGGTCTTCACAAAGATCTGCAT 208 >seq1882 Length=48858 Score = 109 bits (120), Expect = 5e-19 Identities = 167/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 139532 ACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAA 139591 ||||| || |||| | |||| || ||||||| ||||||||||| |||||||| ||| Sbjct 48476 ACATG-CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAA 48534 Query 139592 TCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCG 139651 || || || || ||| || ||||| || ||||| |||||||||| |||||||| Sbjct 48535 TCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCA 48594 Query 139652 GGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGG 139710 ||||| ||||| || ||||| ||| | |||| || | | || | ||||| | || Sbjct 48595 GGAGGAATGCCCTCCTTGTC-CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGG 48653 Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | || | ||||| || || | || || || || || ||||| Sbjct 48654 CTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 48707 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || ||||||| ||||||||||| |||||||| ||||| Sbjct 48708 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 48767 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || || || ||||| || || || |||||||||| |||||||| ||||| Sbjct 48768 CAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGG 48827 Query 139657 TATGCCTTCTTTGTC 139671 ||||| || ||||| Sbjct 48828 AATGCCCTCCTTGTC 48842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496041013634400