Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1882 93.3 4e-14 seq3418 91.5 1e-13 >seq1882 Length=48858 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 142952 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 143011 ||||| || |||| | |||| || || |||| ||||| ||||| || ||||||||| Sbjct 48476 ACATG-CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAA 48534 Query 143012 TCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCG 143071 || || || || ||| || || || || ||||| |||||||||| |||||||| Sbjct 48535 TCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCA 48594 Query 143072 GGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGT 143131 ||||| ||||| || ||||| ||| ||| || | | || | ||||| | || Sbjct 48595 GGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGC 48654 Query 143132 TCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || | ||| | ||||| || || | || || || || || ||||| Sbjct 48655 TCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 48707 >seq3418 Length=21158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | |||| || || |||| ||||| ||||| || ||||||||||| Sbjct 209 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 268 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||| || || || || ||||| |||||||||| |||||||| ||||| Sbjct 269 CAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 328 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||| ||| || | | || | ||||| | || || || Sbjct 329 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCAC 388 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || || | || || || || || ||||| Sbjct 389 ATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 142979 AAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGT 143038 || |||| ||||| ||||| || ||||||||||| || || || ||| || || Sbjct 3 AAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGC 62 Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098 || || || || |||||||||| |||||||| ||||| ||||| || ||||| ||| Sbjct 63 TGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATC 122 Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158 ||| || | | || | ||||| | || || || || | ||| | ||||| || Sbjct 123 TTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCC 182 Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184 || | || || || || || ||||| Sbjct 183 GTGAGGGTCTTCACAAAGATCTGCAT 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506990906220240