Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3418 105 6e-18 seq1882 104 2e-17 seq2272 93.3 4e-14 >seq3418 Length=21158 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 48521 AAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAG 48579 || ||||| || ||| || |||||||||||||||| | | ||| | |||||||||| Sbjct 3 AAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC-AGCGTCCTTCCGTCCTCCAG 61 Query 48580 CTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAAT 48639 |||||| ||| || | || | |||||||||||| || | | ||||||||| ||| Sbjct 62 CTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAAT 121 Query 48640 TTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 || ||| | | | | ||||| || | | |||| |||| || ||||| || || Sbjct 122 CTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCC 181 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || |||||||| |||||||| Sbjct 182 CGTGAGGGTCTTCACAAAGATCTGCAT 208 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCT 48575 ||| || ||||| || ||| || |||||||||||||||| | | ||| | |||||| Sbjct 227 CACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC-AGCGTCCTTCCGTCCT 285 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || | || | |||||||||||| || | | ||||||||| Sbjct 286 CCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCT 345 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | | ||||| || | | |||| |||| || ||||| | Sbjct 346 GAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCT 405 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 | || || ||||| |||||||| |||||||| || Sbjct 406 TCCCTGTAAGAGTCTTCACAAAGATCTGCATTGT 439 >seq1882 Length=48858 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCT 48575 ||| || ||||| || ||| || |||||||||||||||| | | ||| | |||||| Sbjct 48498 CACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC-AGCGTCCTTCCGTCCT 48556 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || | || | |||||||||||| || | | ||||||||| Sbjct 48557 CCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCT 48616 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | | ||||| || | | |||| |||| || ||||| | Sbjct 48617 GAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCT 48676 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || |||||||| |||||||| Sbjct 48677 TCCCCGTGAGGGTCTTCACAAAGATCTGCAT 48707 >seq2272 Length=181047 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || || ||||| ||||| ||||| |||||||||||||| | || ||| || |||| | Sbjct 121067 ACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGA-AAGAGTC-CTGCCGTCAT 121010 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || ||||| || || | || | |||||||||||| ||| | | |||||||| Sbjct 121009 CAAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTT 120950 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||||| ||| | | | ||||| |||| || ||| |||| || ||||||| Sbjct 120949 GGATTTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTT 120890 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || || ||||| || ||||||||| Sbjct 120889 TTCCTGTAAGGGTCTTCACGAAGATCTGCATC 120858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421232168265707