Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq620 96.9 9e-15 >seq620 Length=258453 Score = 96.9 bits (106), Expect = 9e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 || ||||||| |||||||| || || ||||| || ||| | || |||| | |||| Sbjct 180689 CGCGGTACGTGGACCAGGGGGGCGGCAAGCGGAAGGGGAGCCTCGCGGTGTACGTGGAGC 180748 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | ||||| || |||||||||||||| || | || |||||| || ||||||||| Sbjct 180749 CGTGGCATGCAGACATTTTTGAGTTTCTGGAAATTCGCAAAAACCACGGCAAAGAGGAAA 180808 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT 363980 |||| || || || || ||| || | ||| || | |||| || ||||||||||| Sbjct 180809 TGCGAGCTCGAGACCTTTTCCCCGCCTTGTGGATTCCCGACCTCTTCATGAAGCGCGT 180866 Score = 87.8 bits (96), Expect = 5e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||||||| ||| || | ||||||| || || || || || || ||| Sbjct 181212 GCGCAGCAGCTGTGGTTTGCGATCTTGCAGGCGCAGATCGAAACGGGCACTCCGTACATG 181271 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||| || |||||||| ||| ||||||||||||||| || || || |||| Sbjct 181272 TTGTACAAGGACGCGTGCAACGCGAAGAGCAACCAGCAGCACCTGGGCAC-TTTGCGCAG 181330 Query 364231 -AGCAAC 364236 |||||| Sbjct 181331 CAGCAAC 181337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303291695998874