Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3418 96.9 3e-15 seq1882 95.1 1e-14 >seq3418 Length=21158 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || || || | || || |||| || ||| | Sbjct 437 AATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTC 378 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || || ||||||| ||||| || ||||| ||||| ||||| Sbjct 377 AGACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCA 318 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | ||||| | || |||||||| || || || | || | | ||||| || Sbjct 317 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAA 258 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| ||||| ||||| |||| || ||| | | ||||||| || Sbjct 257 CATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 210 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || || |||| || ||| | Sbjct 208 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 149 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||||| ||||| || ||||| ||||| ||||| Sbjct 148 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 89 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||||||||| || || || | || | | ||||| ||| Sbjct 88 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 29 Query 24171 ATTCAAAAAGAATCTACAATTCATTT 24196 ||||| ||||| ||||| |||| || Sbjct 28 ATTCAGAAAGAGTCTACCCTTCACTT 3 >seq1882 Length=48858 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || || |||| || ||| | Sbjct 48707 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 48648 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||||| ||||| || ||||| ||||| ||||| Sbjct 48647 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 48588 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||| || || || | || | | ||||| ||| Sbjct 48587 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 48528 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| ||||| |||| || ||| | | ||||||| || Sbjct 48527 ATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 48481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429916575894585