Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3418 113 4e-20 seq1882 111 1e-19 seq2272 87.8 2e-12 >seq3418 Length=21158 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| || || | ||| ||||| || |||||||||||||| Sbjct 209 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 268 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || | |||||| ||||||||||| ||| |||| | ||||||||| || ||||| Sbjct 269 CAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 328 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || || || ||||| ||| | | || ||| | | ||| | || || | | ||| | Sbjct 329 AATGCCCTCCTTGTC-CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCA 387 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||| || || || |||||||| Sbjct 388 CATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 436 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 131029 AAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGC 131088 || || | ||| ||||| || |||||||||||||| || || | |||||| ||| Sbjct 3 AAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGC 62 Query 131089 TGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATT 131148 |||||||| ||| |||| | ||||||||| || ||||| || || || ||||| ||| | Sbjct 63 TGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC-CTGAAT 121 Query 131149 TTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACC 131207 | || ||| | | ||| | || || | | ||| | |||| || | ||| || || Sbjct 122 CTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCC 181 Query 131208 GGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || ||||||||| Sbjct 182 CGTGAGGGTCTTCACAAAGATCTGCATG 209 >seq1882 Length=48858 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| || || | ||| ||||| || |||||||||||||| Sbjct 48480 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 48539 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || | |||||| ||||||||||| ||| |||| | ||||||||| || ||||| Sbjct 48540 CAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 48599 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || || || ||||| ||| | | || ||| | | ||| | || || | | ||| | Sbjct 48600 AATGCCCTCCTTGTC-CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCA 48658 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| || || || || || || || || ||||||||| Sbjct 48659 CATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATG 48708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| || || | ||| ||||| || |||||||||||||| Sbjct 48708 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 48767 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || | ||||| ||||||||||| ||| |||| | ||||||||| || ||||| Sbjct 48768 CAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGG 48827 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 48828 AATGCCCTCCTTGTC 48842 >seq2272 Length=181047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| |||||||||||||| | || | ||| || || ||||| |||||| || Sbjct 121049 TCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTTCCTGCGAAG 120990 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | ||||||||| || || ||||| || || ||||| |||||| ||| | | Sbjct 120989 ATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTCACATTT 120930 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || |||| | || | ||||| || | |||||| || || || || || ||| Sbjct 120929 TCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCTGTAAGGGTCTTCACG 120870 Query 131224 AAAATCTGCAT 131234 || |||||||| Sbjct 120869 AAGATCTGCAT 120859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471990928106880