Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq164 127 1e-24 seq1882 109 4e-19 seq3418 98.7 7e-16 >seq164 Length=6492 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 188 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGC 247 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||||| |||||||||||||||||| Sbjct 248 TAATCCATTCATGCACGTCACTAATTAGATGAC 280 >seq1882 Length=48858 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| |||||| ||||| || ||| || ||||| |||||||||||| Sbjct 48481 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 48540 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| || | || || || || || || || || || ||||| | || Sbjct 48541 AGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 48600 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| ||| ||||||||||| || || ||| || || Sbjct 48601 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACA 48660 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||| | ||| ||||| || ||||||||| Sbjct 48661 TCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATG 48708 >seq3418 Length=21158 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| |||||| ||||| || ||| || ||||| |||||||||||| Sbjct 210 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 269 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| || | || || || || || || || || || ||||| | || Sbjct 270 AGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 329 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| ||| ||||||||||| || || ||| || || Sbjct 330 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACA 389 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || | || ||||| || |||||||| Sbjct 390 TCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 436 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38110 CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTA 38169 |||| ||||| || ||| || ||||| ||||||||||||| | | |||| || | Sbjct 1 CCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCA 60 Query 38170 ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229 || || ||||| || || || || || ||||| | || | ||| || |||||| || Sbjct 61 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 120 Query 38230 TTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTAC 38289 | ||| ||||||||||| || || ||| || || || | || || || || | Sbjct 121 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCC 180 Query 38290 CCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| | ||| ||||| || ||||||||| Sbjct 181 CCGTGAGGGTCTTCACAAAGATCTGCATG 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334932067399517