Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3418 113 4e-20 seq1882 109 5e-19 seq2272 107 2e-18 seq620 89.7 4e-13 >seq3418 Length=21158 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || ||||||| || ||||| | | Sbjct 436 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 377 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| ||||| ||||||||||| ||||| || ||||| Sbjct 376 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 317 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| | || | || ||||||||| Sbjct 316 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 257 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||| || ||| | || || || |||| Sbjct 256 ATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCG 222 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| || ||||| | | Sbjct 208 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 149 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| ||||| ||||||||||| ||||| || ||||| Sbjct 148 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 89 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| | || | || ||||||||| Sbjct 88 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 29 Query 22399 ATTCAAAAAGAATCCACCATACATTT 22424 ||||| ||||| || ||| | || || Sbjct 28 ATTCAGAAAGAGTCTACCCTTCACTT 3 >seq1882 Length=48858 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| || ||||| | | Sbjct 48707 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 48648 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| ||||| ||||||||||| ||||| || ||||| Sbjct 48647 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 48588 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| | || | || ||||||||| Sbjct 48587 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 48528 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||| || ||| | || || || |||| Sbjct 48527 ATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCG 48493 Score = 98.7 bits (108), Expect = 8e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 ||| ||||| ||||||||||| ||||| || ||||| || ||||| || || |||||||| Sbjct 48852 AAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGCCGGCAA 48793 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 ||| | |||||| | || | || |||||||||||||| ||||| || ||| | || Sbjct 48792 GCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCA 48733 Query 22422 TTTAGTTTTGCG 22433 || || |||| Sbjct 48732 CTTGGTGCTGCG 48721 >seq2272 Length=181047 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || ||||| ||||||| || |||||| | Sbjct 120856 AAGATGCAGATCTTCGTGAAGACCCTTACAGGAAAAACCATCACTCTCGACGTGGAACCT 120915 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || || | || ||||| |||||||||||||| || || || ||| Sbjct 120916 TCCGACACCATCGAAAATGTGAAGGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGAT 120975 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || |||||||| || || || || || | || || | | || | || |||||| Sbjct 120976 CAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTAC 121035 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || ||| |||| | || || || Sbjct 121036 AACATTCAGAAGGAAAGCACCCTTCACTTGGT 121067 >seq620 Length=258453 Score = 89.7 bits (98), Expect = 4e-13 Identities = 195/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 || |||||| || || || || |||||||| |||| || ||||| || ||||||| || Sbjct 182867 CTGGTCCACCGTGAACTTGATCGCGTCCGCAGCCGCCTGCGTGCGGAAGTAGTACAGCCC 182808 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 || |||| || ||| ||| | ||| || |||| | | ||||| ||||| Sbjct 182807 CGTCTTCAGCCCCGCCCGCCAGCCGTGGAAGTGCATGGTGGAGAGCTTGGCGTAAGTGGG 182748 Query 128898 -TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAG 128956 || || || ||| || | || ||| ||||| | |||||| | | || | | Sbjct 182747 ATTCAC-CATGTGAATGTTCAGCGACTGAGACTGATCCACGAAGGGGGCTCTGTCCACGG 182689 Query 128957 CCATA-CCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACG 129015 |||| ||| | || || |||| ||||||||||| || |||| ||| ||| | Sbjct 182688 CCATGTCCACTATGCTTCTTTGCTTT-ATTTCCCACACTGTCCTGTACAGCAGCTTCAAG 182630 Query 129016 TGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAAT 129062 | | || ||||||||||||| |||||| |||||||||| ||||| Sbjct 182629 TCGTCGGGGATTTCTTCAATGTACTGCACACTGCCGTTGTGCGCAAT 182583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419709037082455