Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1882 181 2e-40 seq3418 178 2e-39 seq2272 145 1e-29 seq3447 84.2 4e-11 seq1339 84.2 4e-11 seq707 84.2 4e-11 seq641 84.2 4e-11 >seq1882 Length=48858 Score = 181 bits (200), Expect = 2e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || || |||||||| || ||||| ||||| || || ||||| Sbjct 48490 AGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTT 48549 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || || || | |||||| || ||||| || || | || || || || |||||||| ||| Sbjct 48550 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCC 48609 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||||||||| || |||||||||||||| | || || || | ||| Sbjct 48610 TTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTG 48669 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || |||||||||||||| || || |||||||| Sbjct 48670 ATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 48707 Score = 131 bits (144), Expect = 3e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || || |||||||| || ||||| ||||| || || ||||| Sbjct 48718 AGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTT 48777 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| |||||||| || || | || || || || |||||||| ||| Sbjct 48778 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCC 48837 Query 68364 TTGTCTTGAATCTTTGCCTT 68383 ||||| |||||||||||||| Sbjct 48838 TTGTCCTGAATCTTTGCCTT 48857 >seq3418 Length=21158 Score = 178 bits (196), Expect = 2e-39 Identities = 164/208 (79%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68254 CCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 ||||||| || || |||||||| || ||||| ||||| || || ||||| || || || | Sbjct 1 CCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCA 60 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| |||||||| || || | || || || || |||||||| |||||||| |||| Sbjct 61 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 120 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||||||||| || |||||||||||||| | || || || | |||||||| || | Sbjct 121 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCC 180 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||| || || |||||||| Sbjct 181 CCGTGAGGGTCTTCACAAAGATCTGCAT 208 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || || |||||||| || ||||| ||||| || || ||||| Sbjct 219 AGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTT 278 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || || || | |||||| || ||||| || || | || || || || |||||||| ||| Sbjct 279 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCC 338 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||||||||| || |||||||||||||| | || || || | ||| Sbjct 339 TTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTG 398 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || || ||||| || || ||||||||| Sbjct 399 ATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 437 >seq2272 Length=181047 Score = 145 bits (160), Expect = 1e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| || ||| || || || ||||| ||||| || || ||||| || || || Sbjct 121068 TACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATC 121009 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | ||||| || ||||| || || | || || || || || ||||| ||||||||||| Sbjct 121008 AAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTG 120949 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || ||||| || ||||||||||| | | ||| || || | ||||||||||| Sbjct 120948 GATTTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTT 120889 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || |||||||| ||||| |||||||| Sbjct 120888 TCCTGTAAGGGTCTTCACGAAGATCTGCAT 120859 >seq3447 Length=249472 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGcccc 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 233779 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 233724 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGcccc 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 234095 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 234150 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGcccc 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 235528 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 235473 >seq1339 Length=62179 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGcccc 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 39515 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 39570 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGcccc 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 40111 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 40056 >seq707 Length=104801 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGcccc 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 17070 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 17125 >seq641 Length=125510 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGcccc 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 105432 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 105487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921579694322040