Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3418 95.1 1e-14 seq1882 91.5 1e-13 >seq3418 Length=21158 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| |||||||||||||| || || | || || || || || ||| Sbjct 240 GTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCA 299 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| || || ||||||||||| || ||||| ||||||| || Sbjct 300 GCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTC 359 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | || || || | || | || || || || ||||| Sbjct 360 ACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCTGTAAGAGTC 419 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 420 TTCACAAAGATCTGCAT 436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| |||||||||||||| || || | || || || || || || Sbjct 12 GTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCG 71 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| || || ||||||||||| || ||||| ||||||| || Sbjct 72 GCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTC 131 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | || || || | || | || || || || || || Sbjct 132 ACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTC 191 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 192 TTCACAAAGATCTGCATG 209 >seq1882 Length=48858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| |||||||||||||| || || | || || || || || ||| Sbjct 48511 GTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCA 48570 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| || || ||||||||||| || ||||| ||||||| || Sbjct 48571 GCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTC 48630 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | || || || | || | || || || || || || Sbjct 48631 ACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTC 48690 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 48691 TTCACAAAGATCTGCATG 48708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420115418721684