Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq620 138 2e-27 >seq620 Length=258453 Score = 138 bits (152), Expect = 2e-27 Identities = 395/595 (66%), Gaps = 18/595 (3%) Strand=Plus/Minus Query 244396 GGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT 244455 ||||||| |||| ||| ||||||||| ||| | | |||||||| | || Sbjct 181676 GGCGGCGAAGTAAATGCACTCGAAGATGCGGACGTTGAGCTGGCGGGCCTGCGGGGAGTC 181617 Query 244456 GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGG 244515 ||||||| || | || || ||| ||||||| || ||||||||||| | || ||||| Sbjct 181616 GAAGGGGTAGCGGAGCAGCAGAAAGGCGTCGGCGAGGCCCTGCACGCCCAGCCCAATGGG 181557 Query 244516 TCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575 | ||| ||| |||| || ||| |||||||| || || ||||||| ||| || | Sbjct 181556 CCGGTGGCGCAAGTTGCTGCTGCGGGCCTCGGGCACAGGATAGAAGTTGCGGTCAATTAT 181497 Query 244576 CTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTC 244635 ||||| | |||||| || || | || ||| || | || ||| | || Sbjct 181496 TTTGTTTAAGTTGCGAGTTATAACAGCCACCACGC--GCTTGAGGCCT----TCGAAGTC 181443 Query 244636 GTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTT 244695 | ||| | ||| || ||| | || | || || | ||| |||| ||| Sbjct 181442 GAAGGTCTGGCGGGCCGTG----TCCACG-AAGCGCGGC-AGCGACACGGAAGCCAAGTT 181389 Query 244696 GCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCA 244755 ||| || ||||||||||| | | ||||| |||| || | ||| ||| | ||| |||| Sbjct 181388 GCACACAGCCACCTCCTCAGGGCTGGTGAACTGCACCACTTCGCAGCACAAGTTGCTGCT 181329 Query 244756 CTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCAT 244815 | |||||||||||||| || ||| ||| |||||||| ||||||||||| | ||| Sbjct 181328 GCGCAAAGTGCCCAGGTGCTGCTGGTTGCTCTTCGCGTTGCACGCGTCCTTGTACAACAT 181269 Query 244816 GAAGGGCCCCCCGGTCTCGAGCTG-GGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCT 244874 | | || || || |||| ||| | | | || ||| ||| || | | ||| Sbjct 181268 GTACGGAGTGCCCGTTTCGATCTGCGCCTGCAAGATCGC-AAACCACAGCTGCTGCGCCG 181210 Query 244875 TGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGG 244934 ||||||| || || ||||| |||||| | |||||| ||||||||||| | Sbjct 181209 CCACCGTCCGCCGCCCCCGCCCCTCCCGCTCGTACTGCAGGTACAGCGCCTCGAACTCCG 181150 Query 244935 GGCCCCAGACCT-CGTCTAGGCCGGGGCACGACGC-CGGGCACATGAGACTCCAC 244987 |||||| || |||| || || |||||| ||| ||||||||| || ||||| Sbjct 181149 CGCCCCACCGCTCCGTC-AGCCCCGGGCAC-TCGCACGGGCACATCAGCGTCCAC 181097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944295441682320