Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2272 127 5e-24 seq3418 113 1e-19 seq1882 105 2e-17 >seq2272 Length=181047 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| |||||||| || || || || || || | || || | ||||| || | ||| Sbjct 121061 TGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGC 121002 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||| |||||||| ||| | ||||| || || || || |||||||| Sbjct 121001 TTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTG 120942 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| ||||| || | ||| | ||| || ||||| ||||| || || || || Sbjct 120941 GCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCTGTA 120882 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| Sbjct 120881 AGGGTCTTCACGAAGATCTGCAT 120859 >seq3418 Length=21158 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | ||||| | |||||| || | || || || |||||| Sbjct 246 TCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAG 305 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || || || || ||||| || || || ||||| || Sbjct 306 ATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTC 365 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| |||||||| || |||||||| || Sbjct 366 TCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACA 425 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 426 AAGATCTGCATT 437 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | ||||| | |||||| || | || || || |||||| Sbjct 18 TCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCGGCGAAG 77 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || || || || ||||| || || || ||||| || Sbjct 78 ATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTC 137 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| |||||||| || || ||||| || Sbjct 138 TCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACA 197 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 198 AAGATCTGCAT 208 >seq1882 Length=48858 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | ||||| | |||||| || | || || || |||||| Sbjct 48517 TCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAG 48576 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || || || || ||||| || || || ||||| || Sbjct 48577 ATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTC 48636 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| |||||||| || || ||||| || Sbjct 48637 TCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACA 48696 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 48697 AAGATCTGCAT 48707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179598371208346