Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1722 116 8e-21 seq1393 84.2 5e-11 >seq1722 Length=194924 Score = 116 bits (128), Expect = 8e-21 Identities = 350/534 (66%), Gaps = 10/534 (2%) Strand=Plus/Plus Query 297245 ATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCG-A 297303 ||||||||||| || || | ||||| | ||||| || || ||||| || ||| Sbjct 163836 ATGTCTTTTGGGTTATAGTTGGGGATGAAGGAAGACCACCCTGTTCCGATGCC-TTCGCT 163894 Query 297304 ACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACC 297363 ||||| || || | | ||||| ||||| |||||||||| || || ||||| | ||| Sbjct 163895 TCCATTGACAAGCACAGTTGGAATGACAGGGACATAATACTTGGGCTCAATCTTTTGACC 163954 Query 297364 GTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAA-ACCTGTCGAGTCT 297422 || ||||| || |||| ||| || ||||||| || | |||| || | ||||| | Sbjct 163955 CTCTTCATAAAGGTATTCCAGCAGTGGGTCGTCCGCCTC-AGGAAAGACTAGACGAGTGT 164013 Query 297423 GAGGGTTCAGTTTTGTGAAAATATATC---GTGCACTCGCGTGATCCTTACCACCCTGCA 297479 || || || ||||| || || | ||||| ||| ||| || || || | Sbjct 164014 ACGGCGCGAGCTTGGTGAAGATGTAGCGCGGTGCAGACGC---ATCTTTCCCTCCTTCTT 164070 Query 297480 ATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAAT 297539 ||||| ||||| || || | ||| | | || | ||| ||||| || ||| | Sbjct 164071 TCCTCGAGCCGAATTGTCCAACAGGCTCAAGGAAATTCAGGTTGTTGCTGCCCACAAACC 164130 Query 297540 CCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTAT 297599 ||| || | | | | ||| || |||||| || ||| || ||||| || || || | Sbjct 164131 GCTGCGCCATGGTTATGATAGTTTGTTGCAGGGACTGTTCTCCGTGGTGGTAAGCACTCT 164190 Query 297600 GCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGA 297659 | || || |||||||| ||||| || ||||||| || | | || ||| ||||| Sbjct 164191 GTTCGGCTACGTAACCTGACAACTGAGCGACCTTCAATTCAGCCTTCGTATTTTTCTTGA 164250 Query 297660 AAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGC 297719 || ||| | | | |||||| || || | ||| | ||||| || | || || Sbjct 164251 AAACTGCAAACAGCACTTTGCGCTGCCCAACTTTCCAGCCATCCACAAGTTGAGGGATAG 164310 Query 297720 TTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCGG 297773 || || ||||| || ||||| || ||||||||||| | |||||||| Sbjct 164311 AACGCTCATTGTCGTATCGGGAGAATTGAACAAGTTCCTTGTTTACGAAGTCGG 164364 >seq1393 Length=3875 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/190 (71%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 243180 TATTTCAGATGAACAAGAGCGAAACGAGCTTTT---CGACGCCATCGAAAACATTCCGGC 243236 |||| | ||||| |||| ||| || ||||| ||||||||| | ||||||||||| Sbjct 759 TATTCGAAATGAAAAAGA---AAAAGAACTTTTGTTCGACGCCATTCACAACATTCCGGC 815 Query 243237 GGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACC-CGGTAAATCATTTGCTG 243295 ||| ||||| ||||| |||||| | ||||| | | ||||| ||||| | Sbjct 816 GGTGGCGGTGAAGGCGGCGTGGGCGGCCAAGTGGAT-GAACCGCAGCAAATCTTTTGCGG 874 Query 243296 AGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCA 243355 | | ||||| || | ||||| ||||| ||||| |||||||| ||| ||||||| Sbjct 875 AAAGACTCGTGGCTTTTTGTTGCGTGGAAGGAATTCTTTTTTCCGGATCTTTTTGCGCCA 934 Query 243356 TCTTTTGGCT 243365 | |||||||| Sbjct 935 TTTTTTGGCT 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102827617680450