Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3418 104 2e-17 seq1882 98.7 1e-15 seq620 93.3 4e-14 >seq3418 Length=21158 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || ||||| |||||||||||||| | | || | |||| Sbjct 225 AGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCC 284 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || |||||||| || |||||||| || || || || Sbjct 285 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 344 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| ||| ||| | || || |||| ||||| || | ||| | ||| Sbjct 345 TGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGC-TCCACATCGAGAGTGATGGT 403 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | ||| || || || || |||||| Sbjct 404 CTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 437 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| |||||||||||||| | | || | |||| || |||||| Sbjct 6 TGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGC 65 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| | || || |||||||| || |||||||| || || || || || || ||| Sbjct 66 TTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTT 125 Query 64361 TGCTTTACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| ||| | || || |||| ||||| || | ||| | |||||| || || Sbjct 126 GCCTTCACATTCTCGATGGTGTCTGACGGC-TCCACATCGAGAGTGATGGTCTTCCCCGT 184 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | || || || || || ||||| Sbjct 185 GAGGGTCTTCACAAAGATCTGCAT 208 >seq1882 Length=48858 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || ||||| |||||||||||||| | | || | |||| Sbjct 48496 AGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCC 48555 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || |||||||| || |||||||| || || || || Sbjct 48556 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 48615 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| ||| ||| | || || |||| ||||| || | ||| | ||| Sbjct 48616 TGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGC-TCCACATCGAGAGTGATGGT 48674 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || || || || ||||| Sbjct 48675 CTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 48707 >seq620 Length=258453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 154582 ACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTG 154641 |||| || ||||||||||| || || | || |||| || || | ||||| | ||| Sbjct 181404 ACACGGAAGCCAAGTTGCACACAGCCACCTCCTCAGGGCTGGTGAACTGCACCACTTCGC 181345 Query 154642 CGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATG 154701 |||||| || |||| || | |||||||||| | ||| || || |||||| | Sbjct 181344 AGCACAAGTTGCTGCTGCGCAAAGTGCCCAGGTGCTGCTGGTTGCTCTTCGCGTTGCACG 181285 Query 154702 CGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 |||| |||||||| |||||||| ||||||||||| Sbjct 181284 CGTCCTTGTACAACATGTACGGAGTGCCCGTTTC 181251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499621647709080