Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq620 91.5 1e-13 >seq620 Length=258453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 94121 GGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTT 94180 |||| |||||| ||||| |||| |||||||||||||| || || | | ||||||| Sbjct 180671 GGGTGTTCAACGACGCGTCGCGGTACGTGGACCAGGGGGGCGGCAAGCGGAAGGGGAGCC 180730 Query 94181 TCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGA 94240 ||||||| || | ||||| ||||| || ||| | | || | || | || || | Sbjct 180731 TCGCGGTGTACGTGGAGCCGTGGCATGCAGACATTTTTGAGTTTCTGGAAATTCGCAAAA 180790 Query 94241 ACCACGGCAACGATCTGGA---GAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAG 94297 |||||||||| || ||| | | || ||||||| ||| ||| | ||| | || | Sbjct 180791 ACCACGGCAAAGA---GGAAATGCGAGCTCGAGACCTTTTCCCCGCCTTGTGGATTCCCG 180847 Query 94298 ACCTTTTTATGAAACGCGTC 94317 |||| || ||||| |||||| Sbjct 180848 ACCTCTTCATGAAGCGCGTC 180867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494700275763720