Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3418 131 2e-25 seq1882 127 2e-24 seq2272 86.0 6e-12 >seq3418 Length=21158 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | ||||||||||| ||||| |||||||| || ||| | Sbjct 222 CGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCG 281 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| ||||||||||| ||||| |||||||||||| Sbjct 282 TCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTG 341 Query 127019 TCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| | | || ||| | | |||| |||||| | ||| || |||| || | Sbjct 342 TCC-TGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGAT 400 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || ||||| || ||||| |||||||| Sbjct 401 GGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 436 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126906 CCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTA 126965 |||| || | ||||||||||| ||||| |||||||| || ||| | || || | Sbjct 1 CCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCA 60 Query 126966 GCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGA 127025 |||| || || ||| |||||| ||||||||||| ||||| ||||||||||||||| ||| Sbjct 61 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC-TGA 119 Query 127026 TTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 | | || ||| | | |||| |||||| | ||| || |||| || | || || Sbjct 120 ATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTC 179 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || || || ||||| ||||||||| Sbjct 180 CCCGTGAGGGTCTTCACAAAGATCTGCATG 209 >seq1882 Length=48858 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | ||||||||||| ||||| |||||||| || ||| | Sbjct 48493 CGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCG 48552 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| ||||||||||| ||||| |||||||||||| Sbjct 48553 TCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTG 48612 Query 127019 TCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| | | || ||| | | |||| |||||| | ||| || |||| || | Sbjct 48613 TCC-TGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGAT 48671 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || || || || || ||||| ||||||||| Sbjct 48672 GGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATG 48708 Score = 105 bits (116), Expect = 6e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | ||||||||||| ||||| |||||||| || ||| | | Sbjct 48721 CGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCA 48780 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| ||||||||||| ||||| |||||||||||| Sbjct 48781 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTG 48840 Query 127019 TCC 127021 ||| Sbjct 48841 TCC 48843 >seq2272 Length=181047 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || ||||| ||| |||| | ||||||||||| || || |||||||||||| Sbjct 121013 TCATCAAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTG 120954 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || |||||| ||| | | ||||| |||||| | | || || |||| || | Sbjct 120953 TCTTGGATTTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATG 120894 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || || || || || |||||||| Sbjct 120893 GTTTTTCCTGTAAGGGTCTTCACGAAGATCTGCAT 120859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478766481680