Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3418 156 1e-32 seq1882 154 3e-32 seq2272 87.8 4e-12 >seq3418 Length=21158 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||| || || | |||||| |||| || |||||||| || |||||||| Sbjct 5 GTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTG 64 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| ||||||||||| || ||| ||| || || ||||||||||| Sbjct 65 CTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTT 124 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 | |||||| |||| |||||||| | || ||||| | ||||| ||||| ||||| Sbjct 125 TGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGT 184 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || |||||||| || || Sbjct 185 GAGGGTCTTCACAAAGATCTG 205 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || ||||| || || | |||||| |||| || |||||||| || Sbjct 224 CAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTC 283 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || |||||||| ||||||||||| || ||| ||| || || || Sbjct 284 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 343 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||||||||| |||||| |||| |||||||| | || ||||| | ||||| || Sbjct 344 CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGT 403 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| |||||||| || || Sbjct 404 CTTCCCTGTAAGAGTCTTCACAAAGATCTG 433 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| |||||| |||| || |||||||| || | ||||||||| | ||| Sbjct 82 CTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAACATTCAG 23 Query 200995 AAAGAGTCTACTCTTCAC 201012 ||||||||||| |||||| Sbjct 22 AAAGAGTCTACCCTTCAC 5 >seq1882 Length=48858 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || ||||| || || | |||||| |||| || |||||||| || Sbjct 48495 CAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTC 48554 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || |||||||| ||||||||||| || ||| ||| || || || Sbjct 48555 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 48614 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||||||||| |||||| |||| |||||||| | || ||||| | ||||| || Sbjct 48615 CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGT 48674 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||||||| || |||||||| || || Sbjct 48675 CTTCCCCGTGAGGGTCTTCACAAAGATCTG 48704 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || ||||| || || | |||||| |||| || ||||||||||| Sbjct 48723 CAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATC 48782 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| ||||||||||| ||||||||||| || ||| ||| || || || Sbjct 48783 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 48842 Query 199537 CTGAATCTTTTGCTTC 199552 |||||||||| |||| Sbjct 48843 CTGAATCTTTGCCTTC 48858 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| |||||| |||| ||||||||||| || | ||||||||| | ||| Sbjct 48809 CTGATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAG 48750 Query 200995 AAAGAGTCTACTCTTCAC 201012 ||||||||||| |||||| Sbjct 48749 AAAGAGTCTACCCTTCAC 48732 >seq2272 Length=181047 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | |||||| || | | |||||| || || || || |||||||| |||||| Sbjct 121049 TCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTTCCTGCGAAG 120990 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || ||||||||||| || || || || || || || || || |||||| | Sbjct 120989 ATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTCACATTT 120930 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| |||||| | | ||| || || | ||||| || || || || || || ||||| Sbjct 120929 TCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCTGTAAGGGTCTTCACG 120870 Query 199619 AAAATTTG 199626 || || || Sbjct 120869 AAGATCTG 120862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178865606013369