Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1882 116 4e-21 seq3418 113 5e-20 seq2272 91.5 2e-13 >seq1882 Length=48858 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| || | ||| ||| || || || ||||| || | Sbjct 48479 TGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAG 48538 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | |||| || ||||||||||| ||||| |||| |||||||| || | | Sbjct 48539 ACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAG 48598 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||| ||| | || | | ||||| || |||| Sbjct 48599 GAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCA 48658 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| | |||||||| || ||||| || || || |||||||| ||||| Sbjct 48659 CATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 48707 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| || | ||| ||| || || || ||||| || | Sbjct 48707 TGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAG 48766 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | | || || ||||||||||||||||| |||| |||||||| || | | Sbjct 48767 ACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAG 48826 Query 46485 GCACGCTCTCCTTGTCCATGATCTT 46509 | | || |||||||||| ||||| Sbjct 48827 GAATGCCCTCCTTGTCCTGAATCTT 48851 >seq3418 Length=21158 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| || | ||| ||| || || || ||||| || | Sbjct 208 TGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAG 267 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | |||| || ||||||||||| ||||| |||| |||||||| || | | Sbjct 268 ACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAG 327 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||| ||| | || | | ||||| || |||| Sbjct 328 GAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCA 387 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| | |||||||| || || || || || || |||||||| |||||| Sbjct 388 CATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 437 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||| || || || || | |||| || ||||||||||||||||| Sbjct 17 CTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCGGCGAA 76 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || |||||||||| ||||| ||| | | Sbjct 77 GATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATT 136 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || |||||||| | |||||||| || ||||| || || || || Sbjct 137 CTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCAC 196 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 197 AAAGATCTGCAT 208 >seq2272 Length=181047 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || || ||||| || || ||||| || || ||||| | |||| || || ||||| || Sbjct 121055 GTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTTCCT 120996 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | |||||||| || | ||| | || ||||||||| ||| || ||| Sbjct 120995 GCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTC 120936 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| | |||||| || | ||||||||||| || || || || Sbjct 120935 ACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCTGTAAGGGTC 120876 Query 46577 TTAACAAAGATTTGCATTTT 46596 || || ||||| ||||| || Sbjct 120875 TTCACGAAGATCTGCATCTT 120856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565212208265640