Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1882 109 5e-19 seq3418 104 2e-17 seq550 95.1 1e-14 seq2272 93.3 4e-14 >seq1882 Length=48858 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || |||||||| || |||||||| |||| || ||| | | Sbjct 48707 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 48648 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| || | ||||| ||||| ||||| | || || Sbjct 48647 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 48588 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| |||| | || || || |||||| Sbjct 48587 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 48528 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || || || | || || || ||||||||||| ||||||| ||| Sbjct 48527 ATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGC 48480 >seq3418 Length=21158 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || || || || || || || || || |||||||| |||| || ||| | Sbjct 440 AACAATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCC 381 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | | || | ||| || | ||||| ||||| ||||| | || Sbjct 380 GTCAGACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGA 321 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| |||||||| |||| | || || || || Sbjct 320 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTA 261 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || || | || || || ||||||||||| ||||||| ||| Sbjct 260 CAACATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGC 209 >seq550 Length=33001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||||||||||| |||||||| ||||| |||||||| || |||||||| || ||| Sbjct 70 CTGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGCTGCTCGTTGGAGTCCAAAGTG 129 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 |||||||| | ||| || ||| | || ||| ||||||||| || || ||| Sbjct 130 GCCCAGTCGGCCAAGTCGGCACTCATGTCGATTTCTTCGGTGGTCCAAAAAGAAGCTTCG 189 Query 133426 GCTTTTTTGTACATACTCCACA 133447 |||||||||||||| |||||| Sbjct 190 GCTTTTTTGTACATGTTCCACA 211 >seq2272 Length=181047 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || || ||||||||||| ||||||| || | Sbjct 120856 AAGATGCAGATCTTCGTGAAGACCCTTACAGGAAAAACCATCACTCTCGACGTGGAACCT 120915 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 |||||| | | ||| | || | ||||||| ||||| ||||| | ||||||| || Sbjct 120916 TCCGACACCATCGAAAATGTGAAGGCCAAAATCCAAGACAAGGAGGGCA-TCCCGCCTGA 120974 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| || || || || || |||| | || || || || Sbjct 120975 TCAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTA 121034 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||| || |||||| || || || ||||| Sbjct 121035 CAACATTCAGAAGGAAAGCACCCTTCACTTGGT 121067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500149623242880