Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq37 170 8e-37 seq3418 100 1e-15 seq1882 98.7 4e-15 >seq37 Length=10511 Score = 170 bits (188), Expect = 8e-37 Identities = 395/590 (67%), Gaps = 9/590 (2%) Strand=Plus/Minus Query 451989 TAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGG-- 452046 ||||||| || ||||||||||| || || ||||||||||||||||| ||| ||| ||| Sbjct 849 TAAATCCAGACGAAGCTGTTGCTTACGGAGCTGCAGTTCAAGCAGCAATTTTAAAAGGAG 790 Query 452047 TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGG 452106 || | | | || |||| | || || ||||||| | ||| |||| || || Sbjct 789 TTAACAGCAGCCAAGTCCAGGACTTGTTGCTTT--TAGATGTTGCTCCTTTATCACTAGG 732 Query 452107 AGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTG 452166 | || || ||||| ||| | ||||| || |||||| || || ||| ||||||| Sbjct 731 TTTGGAGACTGCTGGCGGAGTTATGACAAAGTTAATTGAAAGAAATACTACTATTCCCAC 672 Query 452167 TAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 ||||| ||| || | || || ||||| || || || |||||||| Sbjct 671 GAAAAAATCCCAAGTTTTCACGACTTATGCGGACAACCAGCCCGGAGTTTTGATTCAAGT 612 Query 452227 GTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTC 452286 |||||||||||| | || |||||| ||||||||| ||||| | || |||| Sbjct 611 TTTTGAAGGAGAAAGAGCCATGACAAAAGATAATAACTTGTTAGGAAAGTTCCATCTTGA 552 Query 452287 AAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGC 452346 |||||| || ||||| ||| ||| || |||||| |||| | ||| |||| || Sbjct 551 TGGCATTCCGCCAGCTCCAAGAGGAGTTCCGCAGATTGAAGTTACTTTTGACATTGACGC 492 Query 452347 AAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTAC 452406 |||||| ||| | ||||| | ||| ||| || ||||||| || | ||||||| Sbjct 491 AAATGGAATTATGAATGTAACTGCCACTGAGAAGAATACTGGAAAGTCCAATCAAATTAC 432 Query 452407 AATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGC 452466 ||| |||||||||||| | | | | | ||| || || | |||||| | || || Sbjct 431 AATCACTAATGATAAAGGAAGACTGAGTCAGGGAGAGATCGACAGAATGGTGGCGGAGGC 372 Query 452467 AGAAAAATTCAAGGATGATGATGAA-CAAGTTAGAAAACATGTTGAAGCTAAAAACAAAC 452525 || || | ||| | ||| |||||| | | | | ||| | |||||||| || || || Sbjct 371 GGAGAAGTACAAAGCTGAAGATGAAGCTAATAGGCAAAGA-GTTGAAGCAAAGAATGGAC 313 Query 452526 TAGAAGGATATTGTTATCAAATGAAACAAACTGTATTTGGTGATGAAAAA 452575 | || ||||| ||| |||| | |||| || | ||||||||| Sbjct 312 TTGAGAATTATTGCTATTCCATGAGAGGAACT---TTGGAAGATGAAAAA 266 >seq3418 Length=21158 Score = 100 bits (110), Expect = 1e-15 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || || || || ||||| ||||| || | || Sbjct 437 AATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTC 378 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | || ||| ||||| || ||||| || |||||||||||||| Sbjct 377 AGACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCA 318 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || ||| | || || || || || || ||||| || || | ||||| || Sbjct 317 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAA 258 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | || |||||||| || | | |||||||| Sbjct 257 CATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGG 213 Score = 93.3 bits (102), Expect = 2e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || ||||| ||||| || | || Sbjct 208 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 149 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || ||| ||||| || ||||| || |||||||||||||| Sbjct 148 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 89 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || || || ||||| || || | ||||| || Sbjct 88 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 29 Query 391230 ATTGATAAGGATGCAACACTTCACTT 391255 ||| | || || | || |||||||| Sbjct 28 ATTCAGAAAGAGTCTACCCTTCACTT 3 >seq1882 Length=48858 Score = 98.7 bits (108), Expect = 4e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || ||||| ||||| || | || Sbjct 48707 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 48648 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || ||| ||||| || ||||| || |||||||||||||| Sbjct 48647 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 48588 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || || || ||||| || || | ||||| || Sbjct 48587 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 48528 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | || |||||||| || | | |||||||| Sbjct 48527 ATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGG 48484 Score = 87.8 bits (96), Expect = 7e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 391133 AAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAA 391192 ||| ||||| || ||||| || |||||||||||||| || ||| | || ||| | || || Sbjct 48852 AAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGCCGGCAA 48793 Query 391193 ACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCA 391252 || || || |||||||| || || | ||||| || ||| | || || | || ||||| Sbjct 48792 GCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCA 48733 Query 391253 CTTAGTATTAAGACTGAGAGG 391273 ||| || | | |||||||| Sbjct 48732 CTTGGTGCTGCGCCTGAGAGG 48712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975624561402356