Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq37 349 3e-90 >seq37 Length=10511 Score = 349 bits (386), Expect = 3e-90 Identities = 786/1166 (67%), Gaps = 25/1166 (2%) Strand=Plus/Plus Query 517201 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 517260 |||||| || |||||| || ||||| | ||||| || || || |||| ||| Sbjct 410 TCTTCCTTTATCATTAGTGATTGTAATTTGATTGGACTTTCCAGTATTCTTCTCAGTGGC 469 Query 517261 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 517320 ||| ||||| | ||| ||||| || || | ||||| || |||||||| || || || || Sbjct 470 AGTTACATTCATAATTCCATTTGCGTCAATGTCAAAAGTAACTTCAATCTGCGGAACTCC 529 Query 517321 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 ||| |||| || || || || || | || || |||| | ||||||||||| || Sbjct 530 TCTTGGAGCTGGCGGAATGCCATCAAGATGGAACTTTCCTAACAAGTTATTATCTTTTGT 589 Query 517381 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 517440 | || ||| || || |||| ||| || |||| | | || || || | |||||| Sbjct 590 CATGGCTCTTTCTCCTTCAAAAACTTGAATCAAAACTCCGGGCTGGTTGTCCGCATAAGT 649 Query 517441 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 517500 || || ||| ||||||||| ||||| || || ||||| ||||| | || ||||| Sbjct 650 CGTGAAAACTTGGGATTTTTTCGTGGGAATAGTAGTATTTCTTTCAATTAACTTTGTCAT 709 Query 517501 AATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT 517560 || || || || || || ||||| || || | ||||| ||||| | || | | | Sbjct 710 AACTCCGCCAGCAGTCTCCAAACCTAGTGATAAAGGAGCAACATCTAAAAGCAACAAGTC 769 Query 517561 TTGAAGTTTTTCATCAGTTTGA-CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATG 517619 || | || | | ||| || | ||| |||||||||| ||||| || || | Sbjct 770 CTGGACTTGG-CTGCTGTTAACTCCTTTTAAAATTGCTGCTTGAACTGCAGCTCCGTAAG 828 Query 517620 CAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAA 517678 |||||||||| || ||||| | | | ||| ||| || ||||| || | |||| Sbjct 829 CAACAGCTTCGTCTGGATTTATGGATCTGCAGGGTTCTTTTCCGTTGAAGAACTCCTGAA 888 Query 517679 AGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC- 517737 || ||||| | || ||||| || | |||||| || || || | |||||| || Sbjct 889 TGA-GTTGTTGGATTTTCGGAATTCGGGTACTTCCTCCGACCAAGACCACTTCATGAACG 947 Query 517738 ---CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 || | | |||| | | | |||||| || ||||| || | | || Sbjct 948 CTCCTTTTGTCGATCCCACTGTCTTT----TAAAACCTTCTCAACTGGCACTAAACTATT 1003 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854 | || |||| ||||||||||| || |||||| | ||| | ||| |||||| Sbjct 1004 CCGGAAATAGTCCATGCAAAGTTCTTCAAAACGAGCTCTTGAAAGGGAAACAGAATAATC 1063 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAAGATAGTGCA 517912 ||||||||| || | |||||| | |||||| || | ||||| | | || ||| | Sbjct 1064 AATTCCTTCAAAAAGAGAATCTATTTCAATAGTGGCCTGAGTGCTGCTGCTGAGAGTCCT 1123 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT--TGATTCA 517970 | || || | ||| || |||| || | || || ||| | |||| | || | || Sbjct 1124 C--TTCGCTCTTTCGCACTGAGTCCGCAGCCGCCGCAAAGCTCT-GCTGTTGCTGCTGCA 1180 Query 517971 AA-TCTGTTT-TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 | || || | | |||||| ||||| |||| |||||| | ||||| | |||||| Sbjct 1181 GTCTTTGCTTCTGTTTTTTCTTTTGAAGTCTTGAACACAAAAATCAACAAGTCTATTATC 1240 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 || ||||| |||||||| | || | ||||| || ||| | |||| ||||| || || Sbjct 1241 GAAGTCTTCTCCTCCCAAATGCGTGTCTCCTGCAGTTGCTTTAACTTCGAAAATCCCGTC 1300 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 ||||| | ||| | || |||||| || || || ||||| || |||||||| ||||| Sbjct 1301 TTCAATTGTCAACAAAGAAACATCAAAAGTCCCGCCCCCCATGTCGAAAATAAGAACATT 1360 Query 518149 CATTTCT--TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||||||| |||| | ||||| ||||| || || || | || || || ||||||||| Sbjct 1361 CATTTCTCCATGTCCT--TTTTTGTCAAGTCCGTAAGCTATTGCTGCTGCTGTTGGTTCA 1418 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 || || |||||||| ||||| | || ||||| |||| || |||||||||||||||||| Sbjct 1419 TTTATTATTCTCAAGACATTTAACCCCGCAATAGTTCCCGCGTCTTTAGTGGCTTGTCTT 1478 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || ||||| || || || || || ||||| || || || | |||||||| || || Sbjct 1479 TGGCTGTCGTTGAAGTAAGCGGGCACTGTAATGACAGCCTCTTTGACTTCTTTTCCGATG 1538 Query 518327 TAAGCGCTTGCCGTTTGTTTCATTTT 518352 |||| ||| ||| |||||||| Sbjct 1539 AAAGCTTCTGCGATTTCCTTCATTTT 1564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780638446449142