Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq37 352 4e-92 seq94 107 2e-18 >seq37 Length=10511 Score = 352 bits (390), Expect = 4e-92 Identities = 1082/1654 (65%), Gaps = 28/1654 (2%) Strand=Plus/Plus Query 6503 GTTCCTTTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCG 6562 |||||| |||| ||| || || || || || |||||||| || || || ||| || Sbjct 282 GTTCCTCTCATGGAATAGCAATAATTCTCAAGTCCATTCTTTGCTTCAACTCTTT--GCC 339 Query 6563 TACTT--TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTT 6620 || | |||||||||| |||| ||||| ||||| || ||||| | || || ||| Sbjct 340 TATTAGCTTCATCTTCAGCTTTGTACTTCTCCGCCTCCGCCACCATTCTGTCGATCTCTC 399 Query 6621 CTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCT 6680 | | | ||| || |||||||| || || ||||| | | ||| || || | || Sbjct 400 CCTGACTCAGTCTTCCTTTATCATTAGTGATTGTAATTTGATTGGACTTTCCAGTATTCT 459 Query 6681 TATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTT 6740 | || ||| ||||||||| ||| |||||||| |||| || || | || | ||| | Sbjct 460 TCTCAGTGGCAGTTACATTCATAATTCCATTTGCGTCAATGTCAAAAGTAACTTCAATCT 519 Query 6741 GTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGT 6800 | || || || || || | ||||| || | || || | || | || | | Sbjct 520 GCGGAACTCCTCTTGGAGCTGGCGGAATGCCATCAAGATGGAACTTTCCTAACAAGTTAT 579 Query 6801 TATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTAT 6860 |||| | | | | | ||| |||||| | |||| ||| || | || || || | Sbjct 580 TATCTTTTGTCATGGCTCTTTCTCCTTCAAAAACTTGAATCAAAACTCCGGGCTGGTTGT 639 Query 6861 CTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAA 6920 | || | ||| | ||| ||| || | ||||| || |||||||| ||| | Sbjct 640 CCGCATAAGTCGTGAAAACTTGGGATTTTTTCGTGGGAATAGTAGTATTTCTTTCAATTA 699 Query 6921 CCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGA 6980 | ||||||| || || ||| || | || || || | ||| | || || || | Sbjct 700 ACTTTGTCATAACTCCGCCAGCAGTCTCCAAACCTAGTGATAAAGGAGCAACATCTAAAA 759 Query 6981 GTAACAGGTCTTGAACA--GATTC-GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCG 7037 | |||| ||| || || | | | ||| || || |||| || || ||||| || | Sbjct 760 GCAACAAGTCCTGGACTTGGCTGCTGTTAACT---CCTTTTAAAATTGCTGCTTGAACTG 816 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || || || || || || || | | | ||||||| ||||| | Sbjct 817 CAGCTCCGTAAGCAACAGCTTCGTCTGGATTTATGGATCTGCAGGGTTCTTTTCCGTTGA 876 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | | ||| | | |||||| |||||||| ||||| || ||| |||||||| || | Sbjct 877 AGAACTCCTGAATGAGTTGTTGGATTTTCGGAATTCGGGTACTTCCTCCGACCAAGACCA 936 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 ||||| || || ||| |||||| |||| | || || || || | | Sbjct 937 CTTCATGAACGCTCCTTTTGTCGATCCCACTGTCTTTTAAAACCTTCTCAACTGGCACTA 996 Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277 || || ||||| ||||||| || ||||| |||||||| || | | || ||| | Sbjct 997 AACTATTCCGGAAATAGTCCATGCAAAGTTCTTCAAAACGAGCTCTTGAAAGGGAAACAG 1056 Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGA 7335 | |||||| || || | | ||||| |||||||| || | || ||| | | || Sbjct 1057 AATAATCAATTCCTTCAAAAAGAGAATCTATTTCAATAGTGGCCTGAGTGCTGCTGCTGA 1116 Query 7336 TAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACC 7395 | || | ||| || | || ||| || || | || || | || | ||| | Sbjct 1117 GA--GTCCTCTTCGCTCTTTCGCACTGAGTCCGCAGCCGCCGCAAAGCTCTGCTGTTGCT 1174 Query 7396 GGAAATATCTTT-CTTATGTTTA--CGTTTAAACTCTTCAG-AGAAGTGTCGAAGGAGTC 7451 | ||||| ||| ||||| | ||| || |||| | | || || || |||| Sbjct 1175 GCTGCAGTCTTTGCTTCTGTTTTTTCTTTTGAAGTCTTGAACACAAAAATC-AACAAGTC 1233 Query 7452 TCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGA 7511 | |||||| ||||| || ||||| || || || || || || ||||| ||||| || | Sbjct 1234 TATTATCGAAGTCTTCTCCTCCCAAATGCGTGTCTCCTGCAGTTGCTTTAACTTCGAAAA 1293 Query 7512 TACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA 7571 | || ||||||| | ||||| ||||||||||| || || || |||| ||| ||||| | Sbjct 1294 TCCCGTCTTCAATTGTCAACAAAGAAACATCAAAAGTCCCGCCCCCCATGTCGAAAATAA 1353 Query 7572 GTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 | || ||| | || | | | || || || || ||||| || || || || || |||| Sbjct 1354 GAACATTCATTTCTCCATGTCCTTTTTTGTCAAGTCCGTAAGCTATTGCTGCTGCTGTTG 1413 Query 7632 GTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||||| || || | |||||| || | || ||||||||| |||| ||||| || ||| Sbjct 1414 GTTCATTTATTATTCTCAAGACA-TTTAACCCCGCAATAGTTCCCGCGTCTTTAGTGGCT 1472 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||| ||| ||||| ||||| || || || || | ||| || || |||||| || Sbjct 1473 TGTCTTTGGCTGTCGTTGAAGTAAGCGGGCACTGTAATGACAGCCTCTTTGACTTCTTTT 1532 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC- 7809 |||| | | ||| ||||| || |||||||| | | ||||||| || ||||| || Sbjct 1533 CCGATGAAAGCTTCTGCGATTTCCTTCATTTTCATCAACACCATCGCGGAGATCTCCTCG 1592 Query 7810 AGCCGCAAACTGTTTCGTTTC-ACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG 7868 | | ||| | ||| || | || | | || ||||| || | || || | || | Sbjct 1593 GGGTGAAAAGTCTTT--TTGCTTCCCTGATAACTGACTTCTATTAAAGGCTTTCCAGCGG 1650 Query 7869 CACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 |||| | ||| || ||| ||| | |||||| ||| | ||||| |||| | Sbjct 1651 GCCCGGACTTCACCGTAAACGGCCAGTGTTTCATGTCGGCCTGGACTGCGGGGTCGTCGA 1710 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | ||||| || || || || || || || || || | |||||| || || Sbjct 1711 ACTTGCGGCCGATGAGCCGTTTCGCGTCGAAGACCGTATTCTCGGGGTTTCGAGCCACTT 1770 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 | |||||||| || || || | | |||||| | || || || || ||||| || | Sbjct 1771 GATTCTTCGCTGCATCTCCAACTAAACGTTC---CGTGTCAGTGAAAGCCACGTAAGAAG 1827 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 |||| || || || || |||||||| || || ||||| || | |||||| | ||| |||| Sbjct 1828 GGGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATTTCCACCCCGTCGTTCTTCCACACGC 1887 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 | |||||||| ||||| || || || || || || Sbjct 1888 CCACGCACGAGTACGTGGTGCCCAAGTCGATGCC 1921 >seq94 Length=84515 Score = 107 bits (118), Expect = 2e-18 Identities = 192/278 (69%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || ||||| || ||||||||||| || || | | || | | || | ||||| Sbjct 22763 GAGACATCGAAGGTACCACCACCAAGATCGTACACCAGAATGGTCTTCTCGTC------C 22710 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACA 7653 ||||| || |||||||| || || || || || || || || || || |||| || ||| Sbjct 22709 TTCTTGTCCAGACCGTAGGCAATGGCTGCGGCGGTGGGCTCGTTGATGATACGGATGAC- 22651 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| |||||||| || | | || || || || || || || || | |||||| ||||| Sbjct 22650 GTTGAGGCCAGCGATGGCGCCAGCGTCCTTAGTGGCCTGGCGCTGGGCATCGTTGAAGTA 22591 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||| ||||| || || || |||| | |||||| || || | || || || | || Sbjct 22590 GGCTGGGACGGTGACCACGGCGTTCTTGACTTCTTTGCCCAAGTAGCTCTCTGCAACTTC 22531 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||||| || |||||||| | ||| | |||||||| Sbjct 22530 CTTCATCTTTCCCAGAACCATAGCTGAGACCTCTTCAG 22493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635103369533880