Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq37 232 5e-55 seq2272 91.5 1e-12 >seq37 Length=10511 Score = 232 bits (256), Expect = 5e-55 Identities = 548/811 (68%), Gaps = 19/811 (2%) Strand=Plus/Minus Query 551790 GGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGAA 551849 ||||| | ||| | || || ||||| || ||||||||||| || | |||||| || Sbjct 1270 GGAGACACGCATTTGGGAGGAGAAGACTTCGATAATAGACTTGTTGATTTTTGTGTTCAA 1211 Query 551850 GATTTTAAACGAAAAAACA-AAGTTGAT-CT--ATCTACATCTGCCAAAGCTCTTCGTCG 551905 || || ||| ||||||||| ||| | || | | || | || | |||| | || || Sbjct 1210 GACTTCAAAAGAAAAAACAGAAGCAAAGACTGCAGCAGCAACAGC-AGAGCTTTGCGGCG 1152 Query 551906 TCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTG--GTACTCAAACCACT 551963 || | ||| ||||||||||| || ||| || ||| | | | ||||| ||||| Sbjct 1151 GCTGCGGACTCAGTGCGAAAGAGCGAA--GAGGACTCTCAGCAGCAGCACTCAGGCCACT 1094 Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 |||||| ||||||| | ||||| |||||||||||| | | |||| || || Sbjct 1093 ATTGAAATAGATTCTCTTTTTGAAGGAATTGATTATTCTGTTTCCCTTTCAAGAGCTCGT 1034 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTA-GAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 |||||||| |||| || || ||| | || | | | ||||| || | ||||| Sbjct 1033 TTTGAAGAACTTTGCATGGA-CTATTTCCGGAATAGTTTAGTGCCAGTTGAGAAGGTTTT 975 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 || ||| ||| || ||| | || |||||| | || | || || ||| ||| Sbjct 974 AAAAGACAGTGGGATCGACAAAAGGAGCGTTCATGAAGTGGTCTTGGTCGGAGGAAGTAC 915 Query 552143 AAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATG 552201 ||||||| ||||| | || | || || || || ||| || ||| || || Sbjct 914 CCGAATTCCGAAAATCCAACAACTCATTCAGGAGTTCTT-CAACGGAAAAGAACCC--TG 858 Query 552202 AAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | |||||||| || |||||||| || || || ||| |||||||||| ||| | Sbjct 857 CAGATCCATAAATCCAGACGAAGCTGTTGCTTACGGAGCTGCAGTTCAAGCAGCAATTTT 798 Query 552260 TTCTGGACA-AACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 ||| ||| | | || | || | | | ||| |||||||| ||||| ||| Sbjct 797 AAAAGGAGTTAACAGCAGCCAAG-TCCAGGACTTGTTGCTTTTAGATGTTGCTCCTTTAT 739 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 | || ||||| || || | ||| || ||||||| || | || || ||||||||||||| Sbjct 738 CACTAGGTTTGGAGACTGCTGGCGGAGTTATGACAAAGTTAATTGAAAGAAATACTACTA 679 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 |||| |||||||| | || || | || ||| | || || || | | ||| | Sbjct 678 TTCCCACGAAAAAATCCCAAGTTTTCACGACTTATGCGGACAACCAGCCCGGAGTTTTGA 619 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 ||||| ||||||||||||||||| | || ||||||||||| | || | || Sbjct 618 TTCAAGTTTTTGAAGGAGAAAGAGCCATGACAAAAGATAATAACTTGTTAGGAAAGTTCC 559 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 || | || || ||||| || ||||| | ||||| ||||| |||||||||||||| || | Sbjct 558 ATCTTGATGGCATTCCGCCAGCTCCAAGAGGAGTTCCGCAGATTGAAGTTACTTTTGACA 499 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGC 552589 | || || ||||||||| ||||||| ||||| Sbjct 498 TTGACGCAAATGGAATTATGAATGTAACTGC 468 Score = 136 bits (150), Expect = 3e-26 Identities = 329/494 (67%), Gaps = 13/494 (3%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| || ||||| || || || ||| | || || || ||||| || ||||||| Sbjct 1867 GTGGAAATCATCGCCAACGACCAGGGCAACCGCACCACCCCTTCTTACGTGGCTTTCACT 1808 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| ||||||||| |||||||| || |||||| || | || || ||| Sbjct 1807 GACACGGAACGTTTAGTTGGAGATGCAGCGAAGAATCAAGTGGCTCGAAACCCCGAGAAT 1748 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || || ||||| | || || | | || | || | | || ||||| Sbjct 1747 ACGGTCTTCGACGCGAAACGGCTCATCGGCCGCAAGTTCGACGACCCCGCAGTCCAGGCC 1688 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTT-------CTGGAAAACCTTATAT 550284 || ||||| || ||||| || | || || || ||||||| |||| || Sbjct 1687 GACATGAAACACTGGCCGTTT---ACGGTGAA-GTCCGGGCCCGCTGGAAAGCCTTTAAT 1632 Query 550285 TGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCA-GAACAAATTTCATCTATGG 550343 |||| | | || | ||| ||| | |||||||| || | || || | |||| Sbjct 1631 AGAAGTCAGTTATCAGGGAAGCAA-AAAGACTTTTCACCCCGAGGAGATCTCCGCGATGG 1573 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 | || ||||||||||| ||| || ||||| | || ||||||| | || || | Sbjct 1572 TGTTGATGAAAATGAAGGAAATCGCAGAAGCTTTCATCGGAAAAGAAGTCAAAGAGGCTG 1513 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || || || || || || || || ||| ||| | ||||| |||||||| || ||| Sbjct 1512 TCATTACAGTGCCCGCTTACTTCAACGACAGCCAAAGACAAGCCACTAAAGACGCGGGAA 1453 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 |||||| || | ||||| | | || || |||||||| || || || ||| | || | Sbjct 1452 CTATTGCGGGGTTAAATGTCTTGAGAATAATAAATGAACCAACAGCAGCAGCAATAGCTT 1393 Query 550524 ATGGACTTGATAAA 550537 | |||||||| ||| Sbjct 1392 ACGGACTTGACAAA 1379 >seq2272 Length=181047 Score = 91.5 bits (100), Expect = 1e-12 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| ||||| || ||| |||||||| | ||||| || || |||| Sbjct 121065 CAAG-TGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAA 121007 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||| ||||| || || ||||| | ||||||||||| || || || || || ||||| | Sbjct 121006 GTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGA 120947 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| || || || || || || | | | || |||||||| | ||||| Sbjct 120946 TTTTGGCCTTCACATTTTCGATGGTGTC-GGAAGGTTCCACGTCGAGAGTGATGGTTTTT 120888 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| || || ||||| || ||||| Sbjct 120887 CCTGTAAGGGTCTTCACGAAGATCTGCAT 120859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029099957121430