Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3418 132 4e-26 seq1882 127 2e-24 >seq3418 Length=21158 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | || | || || ||||||||||| ||||| || || |||||||| | Sbjct 210 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 269 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || | || |||| ||||| || || || |||| |||||| ||||| || ||| Sbjct 270 AGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 329 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || ||||| ||| || ||| | || | ||||| |||| ||||| Sbjct 330 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACA 389 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || ||||||| || || || || | ||| || ||||| |||||||| ||| Sbjct 390 TCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATTGTT 440 Score = 125 bits (138), Expect = 6e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 101264 AAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAAT 101323 || ||||||||||| ||||| || || |||||||| | | || || | || |||| Sbjct 3 AAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGC 62 Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||||| || || || |||| |||||| ||||| || |||||||| || || || ||||| Sbjct 63 TGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATC 122 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 ||| || ||| | || | ||||| |||| ||||| || ||||||| || || || Sbjct 123 TTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCC 182 Query 101444 GTTAAAGTTTTTACAAATATCTGCATG 101470 || | || || ||||| ||||||||| Sbjct 183 GTGAGGGTCTTCACAAAGATCTGCATG 209 >seq1882 Length=48858 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | || | || || ||||||||||| ||||| || || |||||||| | Sbjct 48481 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 48540 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || | || |||| ||||| || || || |||| |||||| ||||| || ||| Sbjct 48541 AGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 48600 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || ||||| ||| || ||| | || | ||||| |||| ||||| Sbjct 48601 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACA 48660 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||||| || || || || | || || ||||| ||||||||| Sbjct 48661 TCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATG 48708 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | || | || || ||||||||||| ||||| || || |||||||| | Sbjct 48709 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 48768 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || |||| |||| ||||| || || || |||| |||||| ||||| || ||| Sbjct 48769 AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGA 48828 Query 101363 ATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || || ||||| ||| Sbjct 48829 ATGCCCTCCTTGTCCTGAATCTTT 48852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396260496513399