Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq620 104 4e-17 >seq620 Length=258453 Score = 104 bits (114), Expect = 4e-17 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 |||||| | ||| | || |||||||||||| || ||||||| || | || || |||| Sbjct 180876 GTTGTCGTAGACGCGCTTCATGAAGAGGTCGGGAATCCACAAGGCGGGGAAAAGGTCTCG 180817 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 | ||| ||||| ||||| |||||| | | |||| ||||||||||||||| || Sbjct 180816 AGCTCGCATTTCCTCTTTGCCGTGGTTTTTGCGAATTTCCAGAAACTCAAAAATGTCTGC 180757 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT-CGCTTGTTGCCACCCTGATCCA 222200 ||||||||||||| || || || || || || | |||||| ||| ||||| |||| Sbjct 180756 ATGCCACGGCTCCACGTACACCGCGAG-GCTCCCCTTCCGCTTGCCGCCCCCCTGGTCCA 180698 Query 222201 C 222201 | Sbjct 180697 C 180697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928801759654080