Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq37 230 2e-54 seq2272 96.9 2e-14 >seq37 Length=10511 Score = 230 bits (254), Expect = 2e-54 Identities = 572/846 (68%), Gaps = 23/846 (3%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 ||||| || ||||| || | |||||| || ||||| | ||| | || || ||||| Sbjct 1303 GAAGACGGGATTTTCGAAGTTAAAGCAACTGCAGGAGACACGCATTTGGGAGGAGAAGAC 1244 Query 475400 TTTGATAATAGACTTGTATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATA-AAGTTGA 475458 || |||||||||||||| | |||||| |||| ||||| || ||||| | ||| | Sbjct 1243 TTCGATAATAGACTTGTTGATTTTTGTGTTCAAGACTTCAAAAGAAAAAACAGAAGCAAA 1184 Query 475459 TCTTTCAACATCTGCT--AAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAG 475516 | || || | | | ||| || | || || | ||| || ||| | || ||| Sbjct 1183 GACTGCAGCAGCAACAGCAGAGCTTTGCGGCGGCTGCGGACTCAGTGCGAAAGAGCGAAG 1124 Query 475517 CGAGCTCTTT-CTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAAT 475575 | |||| | | || ||||| | ||| ||||| | |||||||||||||||||||| Sbjct 1123 AGGACTCTCAGCAGCAGC-ACTCAGGCCACTATTGAAATAGATTCTCTTTTTGAAGGAAT 1065 Query 475576 TGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTA- 475634 ||||||| | | || |||| ||| |||||||| |||| || || ||| Sbjct 1064 TGATTATTCTGTTTCCCTTTCAAGAGCTCGTTTTGAAGAACTTTGCATGGA-CTATTTCC 1006 Query 475635 GAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAG 475694 | || | | | || ||||| | ||| | | ||| | | |||||| | Sbjct 1005 GGAATAGTTTAGTGCCAGTTGAGAAGGTTTTAAAAGACAGTGGGATCGACAAAAGGAGCG 946 Query 475695 TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTT 475754 | |||||| | || | || ||||| || ||||||| ||||| | || | | || Sbjct 945 TTCATGAAGTGGTCTTGGTCGGAGGAAGTACCCGAATTCCGAAAATCCAACAACT-CATT 887 Query 475755 CATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTG--TAAATCCTGATGAAGCTGTTG 475811 || | | || || || ||||| || | | ||||||| || |||||||||| Sbjct 886 CAGGAGTTCTTCAACGG--AAAAGAACCCTGCAGATCCATAAATCCAGACGAAGCTGTTG 829 Query 475812 CATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAAT- 475870 | || |||||||| || |||||||| |||||| ||| | | | || || | | || | Sbjct 828 CTTACGGAGCTGCAGTTCAAGCAGCAATTTTAAAAGG--AGTTA-AC-AGCAGCCAAGTC 773 Query 475871 -AATA-TTGTA-CTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGG 475927 | | |||| ||| | || || |||| | ||| ||||| | || || | ||| || Sbjct 772 CAGGACTTGTTGCTTTTAGATGTTGCTCCTTTATCACTAGGTTTGGAGACTGCTGGCGGA 713 Query 475928 ATTATGACTAATCTTATTGACAGAAATACTCCTAT-CCCATGCAAAAAATCAAAAGTATT 475986 ||||||| || | ||||| ||||||||| |||| |||| | |||||||| |||| || Sbjct 712 GTTATGACAAAGTTAATTGAAAGAAATACTACTATTCCCACG-AAAAAATCCCAAGTTTT 654 Query 475987 TTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAA 476046 | |||||| | || || || | || || ||| | |||||||| |||||| Sbjct 653 CACGACTTATGCGGACAACCAGCCCGGAGTTTTGATTCAAGTTTTTGAAGGAGAAAGAGC 594 Query 476047 ATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCC 476106 | || |||||||||||| | |||| || ||||||| || ||||| || ||||| Sbjct 593 CATGACAAAAGATAATAACTTGTTAGGAAAGTTCCATCTTGATGGCATTCCGCCAGCTCC 534 Query 476107 CAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 ||||||||||| || ||||||||||||||||| ||||| |||||||| ||| | ||||| Sbjct 533 AAGAGGAGTTCCGCAGATTGAAGTTACTTTTGACATTGACGCAAATGGAATTATGAATGT 474 Query 476167 TACTGC 476172 ||||| Sbjct 473 AACTGC 468 Score = 143 bits (158), Expect = 2e-28 Identities = 335/497 (67%), Gaps = 15/497 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| || ||||| ||||| || || | || || || || || || |||| ||| Sbjct 1867 GTGGAAATCATCGCCAACGACCAGGGCAACCGCACCACCCCTTCTTACGTGGCTTTCACT 1808 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| | | |||||||||| || || |||||| || || || | ||| Sbjct 1807 GACACGGAACGTTTAGTTGGAGATGCAGCGAAGAATCAAGTGGCTCGAAACCCCGAGAAT 1748 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || || || ||| | | || || || || || || || || | ||||| | Sbjct 1747 ACGGTCTTCGACGCGAAACGGCTCATCGGCCGCAAGTTCGACGACCCCGCAGTCCAGGCC 1688 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGG-----TGGTAAACCATATATAG 474623 || ||| || ||||| |||| ||||| | | || ||| || || | |||| Sbjct 1687 GACATGAAACACTGGCCGTTTACGGTGA--AGTCCGGGCCCGCTGGAAAGCCTTTAATAG 1630 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAA-TTTTCACCG-GAACAAATTTCTTCAATGGT 474681 ||| | | |||| ||| | ||| | |||||||| || | || || | ||||| Sbjct 1629 AAGTCAGTTAT-CAGG-GAAGCAAAAAGACTTTTCACCCCGAGGAGATCTCCGCGATGGT 1572 Query 474682 TTTAGCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 || |||||||| ||| ||| |||| ||| ||| ||||||| | || || Sbjct 1571 GTTGATGAAAATGAAGGAAATCGCAGAAGCTTTCATC--GGAAAAGAAGTCAAAGAGGCT 1514 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || ||||| || || || || || || || ||| | ||||| |||||||| |||||| Sbjct 1513 GTCATTACAGTGCCCGCTTACTTCAACGACAGCCAAAGACAAGCCACTAAAGACGCGGGA 1454 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | ||||| || | ||||| || | || || ||||||||||||||||| ||| | ||| Sbjct 1453 ACTATTGCGGGGTTAAATGTCTTGAGAATAATAAATGAACCAACAGCAGCAGCAATAGCT 1394 Query 474860 TATGGTCTTGATAAGAA 474876 || || ||||| || || Sbjct 1393 TACGGACTTGACAAAAA 1377 Score = 95.1 bits (104), Expect = 8e-14 Identities = 241/358 (67%), Gaps = 14/358 (4%) Strand=Plus/Plus Query 290648 ACAAAATTCATTATTTC-ATAATCAATATCTTCTCCACCCAAATAAGAATTACCTGTCAT 290706 |||||| ||| | || || ||| | |||||||| ||||||| | | |||| | Sbjct 1217 ACAAAAATCAACAAGTCTATTATCGAAGTCTTCTCCTCCCAAATGCGTGTCTCCTGCAGT 1276 Query 290707 AGCTA-ATGTTCTAAATAAACCGTCATTAATATTCATTAATGAAATATCTAATGTTCCTG 290765 ||| | ||| ||| | ||||| | ||| ||| || |||| ||| || || || Sbjct 1277 TGCTTTAACTTCGAAA-ATCCCGTCTTCAATTGTCAACAAAGAAACATCAAAAGTCCCGC 1335 Query 290766 CACCAAAATCGTATATAATAACATTACCTCCATTTTTATTTGTCCAAGTTTTGCTTCCAA 290825 | || | ||| | |||| |||||| ||||| | ||||| ||||| ||| Sbjct 1336 CCCCCATGTCGAAAATAAGAACATT-----CATTTCTCCATGTCCTT-TTTTGT---CAA 1386 Query 290826 GACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTG 290885 | || || | || || |||||||||||||||||||| ||||| || |||| | || | Sbjct 1387 GTCCGTAAGCTATTGCTGCTGCTGTTGGTTCATTTATTATTCTCAAGACATTTAACCCCG 1446 Query 290886 CAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTG 290945 |||| || ||| ||| ||| || || | ||| || || || ||||| || |||| Sbjct 1447 CAATAGTTCCCGCGTCTTTAGTGGCTTGTCTTTGGCTGTCGTTGAAGTAAGCGGGCACTG 1506 Query 290946 TAATAACAGCtttttccactttctttttc-aaataattttctgccatttgttttattt 291002 |||| ||||| | || || ||||||| | | || |||||| |||| || |||| Sbjct 1507 TAATGACAGCCTCTTTGAC-TTCTTTTCCGATGAAAGCTTCTGCGATTTCCTTCATTT 1563 >seq2272 Length=181047 Score = 96.9 bits (106), Expect = 2e-14 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| || ||||| || || || ||||| | ||||| ||| || |||| Sbjct 121065 CAAG-TGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAA 121007 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 |||||||||| || || |||||||| || |||||||| || || || ||||||||||| | Sbjct 121006 GTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGA 120947 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 | || || ||| ||| || || || | || || || || || ||||| | Sbjct 120946 TTTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTC 120887 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| ||||| || || Sbjct 120886 CTGTAAGGGTCTTCACGAAGATCTG 120862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268020188783636