Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq37 370 1e-97 seq3418 176 6e-39 seq1882 176 6e-39 seq94 107 3e-18 >seq37 Length=10511 Score = 370 bits (410), Expect = 1e-97 Identities = 1047/1589 (66%), Gaps = 33/1589 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| || || || || ||||| || || || || ||| | || || | || || Sbjct 1921 GGCATCGACTTGGGCACCACGTACTCGTGCGTGGGCGTGTGGAAGAACGACGGGGTGGAA 1862 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | || ||||| || ||||| || || || || ||||| || || || || | Sbjct 1861 ATCATCGCCAACGACCAGGGCAACCGCACCACCCCTTCTTACGTGGCTTTCACTGACACG 1802 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 |||||| | ||||||||||| || || ||||| ||| ||||| ||||| ||| Sbjct 1801 GAACGTTTAGTTGGAGATGCAGCGAAGAATCAAGTGGCTCGAAACCCCGAGAATACGGTC 1742 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || |||||||| || || || || |||||||| || |||||| | ||| || Sbjct 1741 TTCGACGCGAAACGGCTCATCGGCCGCAAGTTCGACGACCCCGCAGTCCAGGCCGACATG 1682 Query 195545 AAGGACTGGTC--TTA---TGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATG 195599 || ||||| | ||| |||||| |||| |||| |||||| | || | | Sbjct 1681 AAACACTGGCCGTTTACGGTGAAGT-----CCGGGCCCGCTGGAAAGCCTTTAATAGAAG 1627 Query 195600 TTGAATTTCACGGTGAGAAGAAACAATTTGC-TCCCGAAGAAATTTCGTCTATGGTGTTG 195658 | | ||| || || | ||| | ||| | ||||| || || || | ||||||||| Sbjct 1626 TCAGTTATCA-GGGAAGCAAAAAGACTTTTCACCCCGAGGAGATCTCCGCGATGGTGTTG 1568 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 || || |||||||| | || ||| ||||||| || ||| || ||||| || || | Sbjct 1567 ATGAAAATGAAGGAAATCGCAGAAGCTTTCATCGGAAAAGAAGTCAAAGAGGCTGTCATT 1508 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || |||||||||| || ||| |||| || || || ||||| | ||||| Sbjct 1507 ACAGTGCCCGCTTACTTCAACGACAGCCAAAGACAAGCCACTAAAGACGCGGGAACTATT 1448 Query 195779 GCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||||| |||| |||||| ||||| || |||||||||||||| || ||||| ||||| || Sbjct 1447 GCGGGGTTAAA-TGTCTTGAGAATAATAAATGAACCAACAGCAGCAGCAATAGCTTACGG 1389 Query 195838 TCTGGACAAGAACAAGGAC--GAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || |||| || |||||| | ||| | ||||| | || || || | || || || Sbjct 1388 ACTTGACA--AAAAAGGACATGGAGAAATGAATGTTCTTATTTTCGACATGGGGGGCGGG 1331 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || |||||||| || | | | ||||||| || || |||||||| || || ||||| Sbjct 1330 ACTTTTGATGTTTCTTTGTTGACAATTGAAGACGGGATTTTCGAAGTTAAAGCAACTGCA 1271 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-- 196013 || || || ||| | || || ||||| |||||| | ||| | | |||| | || Sbjct 1270 GGAGACACGCATTTGGGAGGAGAAGACTTCGATAATAGACTTGT---TGATTTTTGTGTT 1214 Query 196014 -ATGAGTTCCGTCGAAAGAATAAGAA--AGATATTTCTG--GAAATCCTAGGGCTCTTCG 196068 | || ||| |||| || |||| | | | | | | | || || ||| | || Sbjct 1213 CAAGACTTCAAAAGAAA-AAACAGAAGCAAAGACTGCAGCAGCAACAGCAGAGCTTTGCG 1155 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAAT 196128 ||||| ||||| || ||| | || || | |||||| | |||| | | Sbjct 1154 GCGGCTGCGGACTCAGTGCGAAAGAGCGAAGAGGACTCTCAGCAGCAGCACTCAGGCCAC 1095 Query 196129 GGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACG 196188 |||| || ||||| | ||||| |||||||| | | | | || | | || || Sbjct 1094 TATTGAAATAGATTCTCTTTTTGAAGGAATTGATTATTCTGTTTCCCTTTCAAGAGCTCG 1035 Query 196189 TTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACT 196248 ||||||||| | | || | || |||| || | | || ||||| | || | Sbjct 1034 TTTTGAAGAACTTTGCATGGACTATTTCCGGAATAGTTTAGTGCCAGTTGAGAAGGTTTT 975 Query 196249 TCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAAC 196308 ||| ||| || || | ||| ||||| | ||| | || |||||| || Sbjct 974 AAAAGACAGTGGGATCGACAAAAGGAGCGTTCATGAAGTGGTCTTGGTCGGAGGAAGTAC 915 Query 196309 CCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACA 196367 ||| |||||||| || ||||| | | ||| | |||||||| ||||| || Sbjct 914 CCGAATTCCGAAAATCCAACA-ACTCATTCAGGAGTTCTTCAACGGAAAAGAACCCTGCA 856 Query 196368 AAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCT 196427 | | || || || || ||||| |||||||| || || || ||||| || || ||| | Sbjct 855 GATCCATAAATCCAGACGAAGCTGTTGCTTACGGAGCTGCAGTTCAAGCAGCAATTTTAA 796 Query 196428 CAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCC 196487 ||| ||| ||| | | ||||| || | |||| | |||||||| || |||| | Sbjct 795 AAGGAGTTAACAGCAGCCAAGTCCAGGACTTGTTGCTTTTAGATGTTGCTCCTTTATCAC 736 Query 196488 TGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTC 196547 | ||| | || || || || || |||||||| || | ||||| || || || ||||||| Sbjct 735 TAGGTTTGGAGACTGCTGGCGGAGTTATGACAAAGTTAATTGAAAGAAATACTACTATTC 676 Query 196548 CGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTC 196607 | || || || ||||| || | || ||| | || || || || || ||| |||| Sbjct 675 CCACGAAAAAATCCCAAGTTTTCACGACTTATGCGGACAACCAGCCCGGAGTTTTGATTC 616 Query 196608 AAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGAT- 196666 |||| | |||||||||| | || |||| ||||| | | | |||| ||| || Sbjct 615 AAGTTTTTGAAGGAGAAAGAGCCATGACAAAAGATAATAACTTGTTAGGAAAGTTCCATC 556 Query 196667 TTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATA 196726 |||| || ||||| | || || ||||| ||||| |||||| | ||| || || || Sbjct 555 TTGA-TGGCATTCCGCCAGCTCCAAGAGGAGTTCCGCAGATTGAAGTTACTTTTGACATT 497 Query 196727 GACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAG 196786 ||||||||||||||| | || || || || || ||| | |||| || || | | Sbjct 496 GACGCAAATGGAATTATGAATGTAACTGCCACTGAGAAGAATACTGGAAAGTCCAATCAA 437 Query 196787 ATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAA 196846 ||| || || ||||| || || | || | ||| || || || | ||||| Sbjct 436 ATTACAATCACTAATGATAAAGGAAGACTGAGTCAGGGAGAGATCGACAGAATGGTGGCG 377 Query 196847 GATGCGGAAAAGTACAGGGAAGAAGACGA 196875 || ||||| ||||||| | ||||| || Sbjct 376 GAGGCGGAGAAGTACAAAGCTGAAGATGA 348 >seq3418 Length=21158 Score = 176 bits (194), Expect = 6e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || ||||| || || || ||||| ||||| || ||| ||||| Sbjct 436 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 377 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || |||||||| || ||||| |||||||| || |||||| Sbjct 376 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 317 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 316 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 257 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| || |||||||| || ||| | || || Sbjct 256 ATTCAGAAAGAGTCTACCCTTCACTTGGTGCT 225 Score = 170 bits (188), Expect = 3e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || ||||| ||||| || ||| ||||| Sbjct 208 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 149 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || |||||||| || ||||| |||||||| || |||||| Sbjct 148 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 89 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || ||| | || || ||||||||||| Sbjct 88 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 29 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 |||| || |||||||| || ||| Sbjct 28 ATTCAGAAAGAGTCTACCCTTCAC 5 >seq1882 Length=48858 Score = 176 bits (194), Expect = 6e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || ||||| ||||| || ||| ||||| Sbjct 48707 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 48648 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || |||||||| || ||||| |||||||| || |||||| Sbjct 48647 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 48588 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 48587 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 48528 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| || |||||||| || ||| | || || Sbjct 48527 ATTCAGAAAGAGTCTACCCTTCACTTGGTGCT 48496 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 171940 AAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCT 171999 || || |||||||| || ||||| |||||||| || |||||||| || || || || || Sbjct 48857 AAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGCC 48798 Query 172000 GGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACT 172059 || || ||||| || |||||| | || || ||||||||||| |||| || |||||||| Sbjct 48797 GGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTACC 48738 Query 172060 CTACACCTTGTTCT 172073 || ||| | || || Sbjct 48737 CTTCACTTGGTGCT 48724 >seq94 Length=84515 Score = 107 bits (118), Expect = 3e-18 Identities = 196/283 (69%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 195629 GCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTC 195688 || || ||||| | || ||||||| || ||||||||||| ||| || | | Sbjct 22489 GCCCCTGAAGAGGTCTCAGCTATGGTTCTGGGAAAGATGAAGGAAGTTGCAGAGAGCTAC 22548 Query 195689 ATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAA 195748 |||| ||| || || | || || || || || || || ||||||| ||| | || Sbjct 22549 TTGGGCAAAGAAGTCAAGAACGCCGTGGTCACCGTCCCAGCCTACTTCAACGATGCCCAG 22608 Query 195749 CGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTC-TTAGAATTATCAA 195807 || ||||| || |||||||||| || || || || || ||| ||| | | || ||||| Sbjct 22609 CGCCAGGCCACTAAGGACGCTGGCGCCATCGCTGGCCTCAAC-GTCATCCGTATCATCAA 22667 Query 195808 TGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAA 195867 || || || || || || ||||| || |||||||||||| |||||| || || | Sbjct 22668 CGAGCCCACCGCCGCAGCCATTGCCTACGGTCTGGACAAG---AAGGAC---GAGAAGAC 22721 Query 195868 TGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCA 195910 | || | | ||||| ||||||||||| || ||||||||| Sbjct 22722 CATTCTGGTGTACGATCTTGGTGGTGGTACCTTCGATGTCTCA 22764 Score = 102 bits (112), Expect = 1e-16 Identities = 240/362 (66%), Gaps = 13/362 (4%) Strand=Plus/Plus Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 |||||| | || | ||||| || | || |||||||| || || || || || || ||| Sbjct 23455 GACGCAGACTTGAAGAAGTCACAGATCGACGAAATTGTGCTGGTCGGTGGCTCCACTCGT 23514 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGC--TTCTTCAATAATAAAGATTTAAACAAAA 196370 || ||||||||||| ||| | | | || |||||||| || || |||| | Sbjct 23515 ATCCCGAAGATTCAGCAGCTCAT--CAAGGAGTTCTTCAACGGCAAGGAACCCAACAGAG 23572 Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430 |||||||| || ||||| || || || ||||| || || ||||| | ||||||||||| Sbjct 23573 GCATCAACCCCGACGAAGCCGTCGCCTACGGTGCAGCTGTCCAGGCCGGTATTCTCTCAG 23632 Query 196431 GTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGG 196490 | | | || ||| || | |||| || ||||| | ||| | | || | Sbjct 23633 GGGAGGGCA---------CCCAGGACATGGTGCTGCTCGATGTCACCCCCCTGACTCTCG 23683 Query 196491 GTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGA 196550 || ||||||| || || || || ||| |||| | || | | ||| || || || | Sbjct 23684 GTATTGAAACCGCTGGAGGCGTCATGGCTAAGGTCATCAACAAGAATACTGTCATCCCCA 23743 Query 196551 CTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAG 196610 | |||||| ||| ||| || || || || || || ||| | | ||| | ||||| | Sbjct 23744 CGAAGAAGACTCAAACCTTCTCGACCTACTCTGACAACCAATCCGCTGTGCTCATTCAGG 23803 Query 196611 TA 196612 || Sbjct 23804 TA 23805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657831916301040