Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1025 87.8 5e-12 >seq1025 Length=79526 Score = 87.8 bits (96), Expect = 5e-12 Identities = 165/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 302629 GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT 302688 || |||||||| | ||| | | ||||||||| || || ||||| ||||| | || || Sbjct 37154 GCAGTATCAATGATACCTTCTCTACCACCCATGGCGTGAAAGAACAGCTCCTGTGGCAGT 37213 Query 302689 AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTG 302748 || || | | || | ||| || || || | || || || | |||||| ||| Sbjct 37214 AGTCCTGTGAGATAGCTGTGCTCGACAAAGCCTCTGCTTTCAGGAGAGTAGTCGAATTTG 37273 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 | || || ||||| | || || | ||||| | || ||||||||||| || |||||| Sbjct 37274 CTGAAATGCGGCAGTGACCGATTATTGAAGCCGAAAGGAATACGCTTTCCCTCCACGTTC 37333 Query 302809 TGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATC--ACTGCCCTTGGAGCCAG 302866 ||||| |||| ||| | || || | || |||| | |||| || ||||| || |||| Sbjct 37334 TGCTGACCCACGCATGCCATAATTT--GAGATATGTTAATCGTGCTCCCCTTAGATCCAG 37391 Query 302867 C 302867 | Sbjct 37392 C 37392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471747694643259