Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1593 120 5e-21 seq550 100 5e-15 >seq1593 Length=3875 Score = 120 bits (132), Expect = 5e-21 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || ||||||||||||| |||||||| ||||| || ||||||||| |||| ||||||||| Sbjct 1712 CGGTGTACTTGGTGACAGCCTTGGTGCCCTCGGAAACGGCGTGCTTGGCGAGTTCGCCGG 1653 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | | |||||| ||||| |||||||||||||||| | | ||| | ||||| | Sbjct 1652 GAAGCACCAGGCGGACGGCCGTCTGGATCTCGCGGGAGGAAAGCGTATCTTTTTTGTT-G 1594 Query 1485587 TGCGCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 | || ||| || || || | | || |||| | ||| | || ||| Sbjct 1593 TATTTGCACAGCTTTCCAGCTTCCGAAGCAATTTTATCGAAAGTATCGCCAATTAAAGAG 1534 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||| ||| || || ||| |||||| ||||||||||||||||| |||||| Sbjct 1533 GTCATGATCATCATGGACTTCTTGCTGATGCCGGTTTCGGGGTGCACCTGCTTCAGCACC 1474 Query 1485706 TTG 1485708 ||| Sbjct 1473 TTG 1471 >seq550 Length=33001 Score = 100 bits (110), Expect = 5e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 796213 CTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAG 796272 ||||||||||| ||||| |||||||| ||||| ||||| |||||| | | | | | Sbjct 70 CTGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGCTGCTCGTTGGAGTCCAAAGTG 129 Query 796273 ACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCG 796332 |||||| | || |||||| | | ||||| || |||| ||||||||| || || ||| Sbjct 130 GCCCAGTCGGCCAAGTCGGCACTCATGTCGATTTCTTCGGTGGTCCAAAAAGAAGCTTCG 189 Query 796333 GCCTTTTTGTACATCTCCCA 796352 || ||||||||||| | ||| Sbjct 190 GCTTTTTTGTACATGTTCCA 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915852069502373