Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3418 87.8 1e-12 >seq3418 Length=21158 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || ||| | ||||| || ||||| || |||| |||| | Sbjct 437 AATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTC 378 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||||||| || || || ||| | || ||||| Sbjct 377 AGACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCA 318 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||||||||||| | || || | || ||||| Sbjct 317 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAA 258 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| || |||||||| | ||| ||||| || | || |||| || Sbjct 257 CATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398858779120123