Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq37 372 2e-97 >seq37 Length=10511 Score = 372 bits (412), Expect = 2e-97 Identities = 791/1166 (68%), Gaps = 25/1166 (2%) Strand=Plus/Plus Query 281368 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 281427 |||||| || |||||| || ||||| | ||||| || || || |||| ||| Sbjct 410 TCTTCCTTTATCATTAGTGATTGTAATTTGATTGGACTTTCCAGTATTCTTCTCAGTGGC 469 Query 281428 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 281487 ||| ||||| | ||| ||||| || || | ||||| || |||||||| || || || || Sbjct 470 AGTTACATTCATAATTCCATTTGCGTCAATGTCAAAAGTAACTTCAATCTGCGGAACTCC 529 Query 281488 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 ||| |||| || || || || || | || || |||| | ||||||||||| || Sbjct 530 TCTTGGAGCTGGCGGAATGCCATCAAGATGGAACTTTCCTAACAAGTTATTATCTTTTGT 589 Query 281548 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 281607 | || ||| || || |||| ||| || |||| | | || || || | |||||| Sbjct 590 CATGGCTCTTTCTCCTTCAAAAACTTGAATCAAAACTCCGGGCTGGTTGTCCGCATAAGT 649 Query 281608 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 281667 || || ||| ||||||||| ||||| || || ||||| ||||| | || ||||| Sbjct 650 CGTGAAAACTTGGGATTTTTTCGTGGGAATAGTAGTATTTCTTTCAATTAACTTTGTCAT 709 Query 281668 AATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT 281727 || || ||||| || || ||||| || || | ||||| ||||| | || | | | Sbjct 710 AACTCCGCCAGCAGTCTCCAAACCTAGTGATAAAGGAGCAACATCTAAAAGCAACAAGTC 769 Query 281728 TTGAAGTTTTTCATCAGTTTGA-CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATG 281786 || | || | | ||| || | ||| |||||||||| ||||| || || | Sbjct 770 CTGGACTTGG-CTGCTGTTAACTCCTTTTAAAATTGCTGCTTGAACTGCAGCTCCGTAAG 828 Query 281787 CAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAA 281845 |||||||||| || ||||| | | | ||| ||| || ||||| || | |||| Sbjct 829 CAACAGCTTCGTCTGGATTTATGGATCTGCAGGGTTCTTTTCCGTTGAAGAACTCCTGAA 888 Query 281846 AGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC- 281904 || ||||| | || ||||| || | |||||| || || || | |||||| || Sbjct 889 TGA-GTTGTTGGATTTTCGGAATTCGGGTACTTCCTCCGACCAAGACCACTTCATGAACG 947 Query 281905 ---CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 || | | |||| | | | |||||| || ||||| || | | || | Sbjct 948 CTCCTTTTGTCGATCCCACTGTCTTT----TAAAACCTTCTCAACTGGCACTAAACTATT 1003 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021 | || |||| ||||||||||| || |||||| | ||| | ||| |||||| Sbjct 1004 CCGGAAATAGTCCATGCAAAGTTCTTCAAAACGAGCTCTTGAAAGGGAAACAGAATAATC 1063 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAAGATAGTGCA 282079 ||||||||| || | |||||| | |||||| || | ||||| | | || ||| | Sbjct 1064 AATTCCTTCAAAAAGAGAATCTATTTCAATAGTGGCCTGAGTGCTGCTGCTGAGAGTCCT 1123 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT--TGATTCA 282137 | || || | ||| || |||| || | || || ||| | |||| | || | || Sbjct 1124 C--TTCGCTCTTTCGCACTGAGTCCGCAGCCGCCGCAAAGCTCT-GCTGTTGCTGCTGCA 1180 Query 282138 AA-TCTGTTT-TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 | || || | | |||||| ||||| |||| |||||| | ||||| | |||||| Sbjct 1181 GTCTTTGCTTCTGTTTTTTCTTTTGAAGTCTTGAACACAAAAATCAACAAGTCTATTATC 1240 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 || ||||| |||||||| | || | ||||| || ||| | |||| ||||| || || Sbjct 1241 GAAGTCTTCTCCTCCCAAATGCGTGTCTCCTGCAGTTGCTTTAACTTCGAAAATCCCGTC 1300 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 ||||| | ||| | || ||||||| || || || ||||| || |||||||| ||||| Sbjct 1301 TTCAATTGTCAACAAAGAAACATCAAAAGTCCCGCCCCCCATGTCGAAAATAAGAACATT 1360 Query 282316 CATTTCT--TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 ||||||| |||| | ||||| ||||| || || || | || || || ||||||||| Sbjct 1361 CATTTCTCCATGTCCT--TTTTTGTCAAGTCCGTAAGCTATTGCTGCTGCTGTTGGTTCA 1418 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 || || |||||||| ||||| | || ||||| |||| || |||||||||||||||||| Sbjct 1419 TTTATTATTCTCAAGACATTTAACCCCGCAATAGTTCCCGCGTCTTTAGTGGCTTGTCTT 1478 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493 || ||||| || || || || || ||||| || || ||| | ||||||||||| || Sbjct 1479 TGGCTGTCGTTGAAGTAAGCGGGCACTGTAATGACAGCCTCTTTGACTTCTTTTCCGATG 1538 Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTT 282519 |||| ||| ||| |||||||| Sbjct 1539 AAAGCTTCTGCGATTTCCTTCATTTT 1564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740448401965782